Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00259 ATGGTGGTGTGCTTCAAGCTCATAATGTGGAATGTGGTACTGCTTATTGTTTGTTCTCTCATTGTTTCTTCTGCTAAGGCCTCAGTTTCCTATGATTCAAAGGCCATCACTATTAATGGCCAGAGAAGGATCCTCATTTCTGGATCCATTCATTACCCAAGGAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCCAAGGAGGGAGGCCTGGATGTGATTCAGACGTATGTTTTCTGGAATGGGCACGAACCTTCACCTGGCAAGTATTATTTTGAGGGGAACTATGATCTGGTGAAGTTCATAAAGCTGGCGCAGCAAGCAGGGCTGTATGTTCATCTCAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGGGTTTCCCTGTTTGGCTAAAGTACATTCCAGGAATCAGCTTCAGAACAGACAATGAACCTTTTAAGTATCAAATGCAAAAATTTACCACGAAGATCGTTGATTTAATGAAATCGGAGCGGTTATATGAGTCTCAGGGAGGTCCAATAATTATGTCCCAGATTGAAAATGAATATGGACCTATAGAATATGAAATTGGTGCTGCCGGTAAAGCTTACACTAATTGGGCTGCAGATATGGCTGTGGGACTGGGTACTGGGGTTCCATGGGTCATGTGCAAGCAAGATGACACGCCTGATCCTCTTATTAACACTTGCAATGGCTTCTACTGTGATTATTTCTCACCAAATAAGGCTTACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACAGAGTTTGGAGGTCCTGTTCCTCATCGACCTGCAGAAGACATGGCATTTTCAGTTGCAAGGTTTCTACAGAAAGGAGGATCATTTGTGAATTATTACATGTATCATGGGGGAACAAATTTCGGTCGAACTGCTGGTGGTCCCTTTATTGCAACAAGCTATGATTATGATGCACCACTTGATGAATATGGATTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATCTGCACAGAGCAATAAAACTGTGTGAACCAGCCTTAGTATCGGGAGATCCTGCTGTAACAAAGATTGGAAACTATCAAGAGGCGCATGTGTTTAAATCGAAGTCGGGAGCTTGTGCTGCATTCCTTGCAAATTATAACCCAAAATCTTATGCAACTGTGGCATTTGGAAACATGCATTACAATTTGCCTCCTTGGTCTATAAGCATTCTTCCTGACTGCAAGCACACTGTTTATAACACTGCAAGGATTGGTTCCCAGAGCGCCCAGATGAAGATGACTCGTGTTCCTATTCATGGCGGACTCTCTTGGTTATCATTCAATGAAGAAACGACAACTACTGATGATAGTTCCTTCATCATGACTGGCCTGTTAGAGCAGTTAAATACAACAAGAGATTTATCTGACTACTTGTGGTACTCCACAGATGTTGTTCTTGATCCCAATGAAGGATTTCTGAGTAACGGAAAGGATCCTGTTCTCACCGTGTTTTCTGCTGGGCATGCTTTGCATGTTTTTATAAATGGTCAGCTATCAGGAACTTCATATGGAAGCTTAGAATTCCCTAAACTGACATTTAGTGAAGGAGTGAAGCTCAGAGCCGGTGTTAACAAGATCTCTCTTCTAAGTGTTGCAGTTGGACTCCCAAATGTTGGTCCTCATTTTGAAACATGGAATGCTGGTGTTCTAGGCCCAATTTCATTAAGTGGTCTCAACGAAGGGAGAAGGGACTTGTCTTGGCAGAAATGGTCTTACAAGGTGGGTCTTAAAGGTGAAACCTTGAGTCTTCACTCTCTTAGTGGAAGTTCCTCAGTGGAGTGGATCCAGGGATCTTTAGTTTCTAGAAGTCAGCCTTTGACTTGGTACAAAACAACATTCGACGCCCCAGCTGGGACTGCACCATTGGCTTTAGACATGGACAGCATGGGCAAAGGTCAAGTGTGGTTAAATGGACAGAATCTTGGCCGCTACTGGCCTGCTTATAAAGCATCCGGTACCTGTGATTATTGTGACTATGCTGGAACTTATAATGAGAATAAATGCAGAAGTAACTGTGGCGAGGCATCTCAAAGATGGTATCACGTTCCTCAGTCATGGCTAAAGCCTACAGGAAATTTATTGGTTGTGTTTGAAGAGCTAGGTGGAGATCCCAATGGAATCTTTTTGGTTAGAAGGGATATAGATAGTATATGTGCTGATATTTATGAGTGGCAGCCAAACCTTATAAGCTATCAGATGCAAGTTTCTGGCAAACCGCCTGTCAGGCCAAAAGTTCATTTATCATGTAGCCCTGGACAGAAAATCTCATCAATCAAATTTGCCAGCTTTGGTACTCCAGTAGGTTCTTGTGGAAATTTCCATGAAGGAAGTTGTCATGCTCATAAGTCTTATGATGCCTTTGAAAGGAATTGTGTTGGACAAAATTGGTGCACGGTAACAGTGTCACCTGAAAATTTTGGAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCTGTGGAAGCTATTTGTACCTGA 2523 0.4308 MVVCFKLIMWNVVLLIVCSLIVSSAKASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKYQMQKFTTKIVDLMKSERLYESQGGPIIMSQIENEYGPIEYEIGAAGKAYTNWAADMAVGLGTGVPWVMCKQDDTPDPLINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGPVPHRPAEDMAFSVARFLQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDPAVTKIGNYQEAHVFKSKSGACAAFLANYNPKSYATVAFGNMHYNLPPWSISILPDCKHTVYNTARIGSQSAQMKMTRVPIHGGLSWLSFNEETTTTDDSSFIMTGLLEQLNTTRDLSDYLWYSTDVVLDPNEGFLSNGKDPVLTVFSAGHALHVFINGQLSGTSYGSLEFPKLTFSEGVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPISLSGLNEGRRDLSWQKWSYKVGLKGETLSLHSLSGSSSVEWIQGSLVSRSQPLTWYKTTFDAPAGTAPLALDMDSMGKGQVWLNGQNLGRYWPAYKASGTCDYCDYAGTYNENKCRSNCGEASQRWYHVPQSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSICADIYEWQPNLISYQMQVSGKPPVRPKVHLSCSPGQKISSIKFASFGTPVGSCGNFHEGSCHAHKSYDAFERNCVGQNWCTVTVSPENFGGDPCPNVMKKLSVEAICT 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00259 840 FunFam Beta-galactosidase 24 344 - -
Spst5g00259 840 PRINTS Glycosyl hydrolase family 35 signature 172 187 IPR001944 GO:0004553|GO:0005975
Spst5g00259 840 PRINTS Glycosyl hydrolase family 35 signature 60 78 IPR001944 GO:0004553|GO:0005975
Spst5g00259 840 PRINTS Glycosyl hydrolase family 35 signature 251 266 IPR001944 GO:0004553|GO:0005975
Spst5g00259 840 PRINTS Glycosyl hydrolase family 35 signature 39 56 IPR001944 GO:0004553|GO:0005975
Spst5g00259 840 PRINTS Glycosyl hydrolase family 35 signature 115 134 IPR001944 GO:0004553|GO:0005975
Spst5g00259 840 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Spst5g00259 840 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Spst5g00259 840 PRINTS Glycosyl hydrolase family 35 signature 288 303 IPR001944 GO:0004553|GO:0005975
Spst5g00259 840 PRINTS Glycosyl hydrolase family 35 signature 308 324 IPR001944 GO:0004553|GO:0005975
Spst5g00259 840 FunFam Beta-galactosidase 293 421 - -
Spst5g00259 840 Pfam Galactose binding lectin domain 762 839 IPR000922 GO:0030246
Spst5g00259 840 FunFam Beta-galactosidase 447 584 - -
Spst5g00259 840 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 174 186 IPR019801 GO:0004553|GO:0005975
Spst5g00259 840 Pfam Beta-sandwich domain in beta galactosidase 348 419 IPR041392 -
Spst5g00259 840 ProSiteProfiles SUEL-type lectin domain profile. 754 840 IPR000922 GO:0030246
Spst5g00259 840 PANTHER BETA-GALACTOSIDASE RELATED 21 743 IPR001944 GO:0004553|GO:0005975
Spst5g00259 840 SUPERFAMILY (Trans)glycosidases 29 345 IPR017853 -
Spst5g00259 840 SUPERFAMILY Galactose-binding domain-like 583 746 IPR008979 -
Spst5g00259 840 SUPERFAMILY Galactose-binding domain-like 403 574 IPR008979 -
Spst5g00259 840 FunFam Beta-galactosidase 750 840 - -
Spst5g00259 840 Gene3D - 599 733 - -
Spst5g00259 840 FunFam Beta-galactosidase 592 733 - -
Spst5g00259 840 Pfam Glycosyl hydrolases family 35 36 340 IPR031330 -
Spst5g00259 840 CDD Gal_Rha_Lectin_BGal 757 839 - -
Spst5g00259 840 Gene3D Glycosidases 25 345 - -
Spst5g00259 840 Gene3D - 756 840 IPR043159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00259 Spst-Chr5 2294849 2300393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00259 7 840 Glycoside Hydrolase AT3G13750 79.426 0.0 1424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00259 - - gmx:100811187 1702.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00259 5 2294849 2300393 Spst5g00259 5 2294849 2300393 ECH
Spst5g00259 5 2294849 2300393 Spst4g02252 4 63302756 63308299 PCT