Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02252 ATGAGCTTCAACAAGCTCATAGTGTGGAATGTGCCACTACTCTTTGTGGTGGTGTTTGCATGTTCACTGATTGGTCATACTTCAGCTTCTGTGTCCTATGACCATAAAGCTATCACCATCAATGGACAAAGAAGGATACTGCTTTCTGGCTCTATTCACTACCCCAGAAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCAAAGGAAGGAGGTTTGGATGTGATTGAAACTTATGTTTTCTGGAATGGACATGAACCTTCACCTGGCAAATATTATTTTGGGGGAAACTATGATCTGGTGAGGTTCATAAAGCTTGTGCAGCAAGCAGGCCTCTATGTTAACCTCAGAATTGGTCCTTATGTTTGTGCTGAATGGAACTTCGGAGGTTTCCCTGTTTGGCTCAAGTACATTCCAGGTATCAGCTTCAGAACAGACAATGAACCGTTTAAGTTTCAAATGGAAAAATTTACCAAGAAGATTGTGGATATGATGAAAGCAGAAAGGTTATTCGAGTCTCAAGGTGGTCCGATAATTCTATCTCAGATTGAAAATGAATATGGACCTATGGAGTATGAACTTGGTGCTCCTGGTAGAGCTTACACTCAATGGGCAGCACATATGGCTGTAGGCCTTGGCACTGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTATTATTAACACTTGCAACGGCTTCTATTGTGATTATTTCTCTCCAAATAAGGCTTCCAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAATTTGGCGGAGCAGTTCCTCACAGACCTGCTGAGGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTACTATATGTATCATGGGGGGACAAATTTTGGTCGAACTGCTGGTGGTCCCTTTATTGCCACGAGCTATGATTATGATGCGCCTCTTGATGAGTATGGATTGCCCAGAGAACCAAAGTGGGGTCATCTGAAGGATTTACATAGAGCTATAAAACTCTGTGAACCTGCATTAGTATCTGGAGATCCTACTGTACAAAAACTTGGAAACTATGAGGAGGCTCATGTTTTTAGATCAAATTCTGGAGCTTGTGCTGCATTCCTTGCAAACTATAATCCACAATCCTATGCAACAGTGGCATTTGGAAATCAGCATTACAACTTGCCCCCTTGGTCTATAAGCATTCTTCCCAACTGCAAGCACACTGTTTATAACACTGCAAGGGTTGGTTCTCAGAGCACAACAATGAAAATGAGTCGTGTTCCTATTCATGGAGGACTATCTTGGAAAGCGTTTAATGAAGAAACAACCACTACTGGTGATAGTTCCTTCACTGTGACTGGCCTATTGGAGCAGATAAATGCAACCAGAGATTTGTCTGATTACTTGTGGTACTCCACAGATGTTGTGATCGATCCCAATGAAGGATTTTTGAGGAACGGAAAGAATCCTTTTCTTACAGTTTTTTCTGCTGGGCATGCTTTGCATGTTTTTATCAACAATCAGCTGGCAGGAACTGCATACGGAAGCTTAGAGGCCCCCAAACTAACCTTTAGTGAAAGTGTGAAGCTCAGAGCTGGTGTTAACAAAATCTCCCTTCTAAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTGCTCGGCCCAATTTCATTGAGTGGTCTCAATGAGGGGAGGAGAGACTTAACTTGGCAAAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAATCTACATTCTCTTAGTGGAAGTTCCTCTGTTGAGTGGCTTCAGGGGTATTTAGTTTCTAGAAGACAGCCATTGACATGGTACAAAACTACCTTTGATGCCCCATCTGGAGTTGCACCATTGGCTTTAGACATGGCCAGCATGGGTAAAGGTCAAGTGTGGATAAATGGACAAAGTCTGGGTCGCTACTGGCCTGCTTACAAAGCATCTGGTTCTTGTGGTTACTGTAACTATGTAGGAACTTACAATGAGAAAAAATGTGCAAGTAACTGTGGCGAGGCTTCACAACGATGGTATCATGTTCCTCATTCTTGGCTGAAGCCAACAGGAAATTTATTGGTTGTGTTTGAGGAATTGGGTGGGGATCCGAACGGAATCTTTTTGGTTAGAAGGGATATTGACAGTGTATGTGCTGATATCTATGAGTGGCAGCCAAATCTAGTAAGTTATGAGATGCAAGCTTCTGGCAAAGTCAGAAGTCCTGTGAGACCAAAAGCTCATTTGTCATGTGGTCCTGGACAAAAAATTTCATCAATCAAGTTTGCCAGCTTTGGCACTCCGGTAGGATCTTGTGGAAGCTACCGTGAAGGGAGTTGTCATGCTCACAAGTCATATGATGCTTTCCAAAAGAATTGTGTTGGGCAAAGCTGGTGCACAGTGACAGTGTCTCCAGAAATTTTTGGAGGAGATCCATGTCCAAGTGTCATGAAGAAGCTCTCAGTGGAGGCCATTTGCACCTGA 2535 0.4327 MSFNKLIVWNVPLLFVVVFACSLIGHTSASVSYDHKAITINGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDVIETYVFWNGHEPSPGKYYFGGNYDLVRFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKFQMEKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYELGAPGRAYTQWAAHMAVGLGTGVPWIMCKQDDAPDPIINTCNGFYCDYFSPNKASKPKMWTEAWTGWFTEFGGAVPHRPAEDLAFSIARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLKDLHRAIKLCEPALVSGDPTVQKLGNYEEAHVFRSNSGACAAFLANYNPQSYATVAFGNQHYNLPPWSISILPNCKHTVYNTARVGSQSTTMKMSRVPIHGGLSWKAFNEETTTTGDSSFTVTGLLEQINATRDLSDYLWYSTDVVIDPNEGFLRNGKNPFLTVFSAGHALHVFINNQLAGTAYGSLEAPKLTFSESVKLRAGVNKISLLSVAVGLPNVGPHFERWNAGVLGPISLSGLNEGRRDLTWQKWSYKVGLKGEALNLHSLSGSSSVEWLQGYLVSRRQPLTWYKTTFDAPSGVAPLALDMASMGKGQVWINGQSLGRYWPAYKASGSCGYCNYVGTYNEKKCASNCGEASQRWYHVPHSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYEMQASGKVRSPVRPKAHLSCGPGQKISSIKFASFGTPVGSCGSYREGSCHAHKSYDAFQKNCVGQSWCTVTVSPEIFGGDPCPSVMKKLSVEAICT 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02252 844 SUPERFAMILY Galactose-binding domain-like 405 576 IPR008979 -
Spst4g02252 844 Pfam Beta-sandwich domain in beta galactosidase 350 421 IPR041392 -
Spst4g02252 844 FunFam Beta-galactosidase 449 586 - -
Spst4g02252 844 FunFam Beta-galactosidase 594 735 - -
Spst4g02252 844 FunFam Beta-galactosidase 754 844 - -
Spst4g02252 844 PANTHER BETA-GALACTOSIDASE RELATED 24 745 IPR001944 GO:0004553|GO:0005975
Spst4g02252 844 ProSiteProfiles SUEL-type lectin domain profile. 758 844 IPR000922 GO:0030246
Spst4g02252 844 PRINTS Glycosyl hydrolase family 35 signature 62 80 IPR001944 GO:0004553|GO:0005975
Spst4g02252 844 PRINTS Glycosyl hydrolase family 35 signature 174 189 IPR001944 GO:0004553|GO:0005975
Spst4g02252 844 PRINTS Glycosyl hydrolase family 35 signature 41 58 IPR001944 GO:0004553|GO:0005975
Spst4g02252 844 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Spst4g02252 844 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Spst4g02252 844 PRINTS Glycosyl hydrolase family 35 signature 117 136 IPR001944 GO:0004553|GO:0005975
Spst4g02252 844 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Spst4g02252 844 PRINTS Glycosyl hydrolase family 35 signature 648 664 IPR001944 GO:0004553|GO:0005975
Spst4g02252 844 PRINTS Glycosyl hydrolase family 35 signature 621 635 IPR001944 GO:0004553|GO:0005975
Spst4g02252 844 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 176 188 IPR019801 GO:0004553|GO:0005975
Spst4g02252 844 Pfam Glycosyl hydrolases family 35 38 342 IPR031330 -
Spst4g02252 844 Gene3D - 599 735 - -
Spst4g02252 844 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Spst4g02252 844 FunFam Beta-galactosidase 295 423 - -
Spst4g02252 844 Gene3D - 755 844 IPR043159 -
Spst4g02252 844 Pfam Galactose binding lectin domain 766 843 IPR000922 GO:0030246
Spst4g02252 844 SUPERFAMILY (Trans)glycosidases 29 347 IPR017853 -
Spst4g02252 844 Gene3D Glycosidases 25 346 - -
Spst4g02252 844 CDD Gal_Rha_Lectin_BGal 758 843 - -
Spst4g02252 844 SUPERFAMILY Galactose-binding domain-like 585 748 IPR008979 -
Spst4g02252 844 FunFam Beta-galactosidase 26 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02252 Spst-Chr4 63302756 63308299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02252 4 843 Glycoside Hydrolase AT3G13750 79.405 0.0 1420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02252 - - gmx:100785688 1714.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02252 4 63302756 63308299 Spst4g02252 4 63302756 63308299 ECH
Spst5g00259 5 2294849 2300393 Spst4g02252 4 63302756 63308299 PCT