Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00239 ATGGTTTTTTTCTTCAAGAGGGTCAACTTATTCCTCTTTTTTCACCTCCTTGTTGCAACACCCATCTTCTCAGATTCCTCCTTCAGTTCAAATGCAATCTCCCCCTCCAAGTTCCTAGATTTAGCTAAGGATCCTCGGGTGTTTGATTGGATGGTGGGTATCAGGAGGAAGATTCATGAGAATCCAGAGCTGGGTTATGAGGAATTTGAGACCAGTAAGCTGATAAGAGCGGAATTAGATAAATTGGGCATCTCATATAAATACCCAGTTGCAGTCACTGGTGTTATTGGCTTCATAGGGACTGGACTCCCTCCTTTTGTTGCATTAAGAGCTGACATGGATGCTCTTCCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCTTGTGGTCATGATGCTCATGTTTCCATGCTTCTCGGTGCGGCAAAGATCCTCAAAGAACATGAAAATGCGATTAGAGGAACTGTTGTTCTTGTTTTTCAACCAGCCGAAGAAGGAGGTGCAGGGGCTAAGAAAATTCTAGATGCTGGAGGCTTGGAAAATATCTCTGCCATATTTGGATTGCATATTGCACCTACCTTTCCTATTGGTGAAGTGCGCTCTAGGTCGGGTCCTATATTTGCAGGAAGCGGCTTCTTTGAAGCCACAATAAATGGCAGGGGAGGTCATGCAGCTATTCCTCAGCACTCTATAGACCCAATATTGGCAGCGTCCAATGTGATTGTTAGTTTACAGCATATTGTTTCTCGTGAGGCCAATCCTCTGGACTCCCAGGTTGTGACTGTAGGAAAGTTTCAAGGAGGTGGTGCTTTCAATGTTATTCCAGACTCTGTCACAATTGGTGGCACCTTCCGAGCTTTTTCAAAAGAAAGCTTCATGCAACTGAGACAGCGGATTGAGCAGGTTATCACTGGGCAAGCTGCTGTGCAGAGATGCAATGCAACGGTCAACTTTCTTGACGAAGAGAAACCTTTCTTCCCCCCTACAGTAAACAATGGTGACTTGCATTTGTTCTTTAACAGTGTTGCTGGGAGTTTACTTGGTGTCGATAAAGTTAAGGAAATGCAACCATTGATGGGATCTGAGGACTTTGCATTCTATCAAGAGGTTTTTCCAGGATACTTCTTCCTCCTTGGAATGGAAAATGCCTCTGTTGAGCGTCTTGAATCACCACACTCCCCGTATTACAAAATCAATGAAGATGCACTTCCTTATGGAGCTGCACTTCATGCATCATTAGCTACTAGGTATCTTCTCAAGTTAAATCAAGACGTACCGGTAGTGGAGGGGAAGCATCACGATGAATTATAG 1335 0.4427 MVFFFKRVNLFLFFHLLVATPIFSDSSFSSNAISPSKFLDLAKDPRVFDWMVGIRRKIHENPELGYEEFETSKLIRAELDKLGISYKYPVAVTGVIGFIGTGLPPFVALRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVSMLLGAAKILKEHENAIRGTVVLVFQPAEEGGAGAKKILDAGGLENISAIFGLHIAPTFPIGEVRSRSGPIFAGSGFFEATINGRGGHAAIPQHSIDPILAASNVIVSLQHIVSREANPLDSQVVTVGKFQGGGAFNVIPDSVTIGGTFRAFSKESFMQLRQRIEQVITGQAAVQRCNATVNFLDEEKPFFPPTVNNGDLHLFFNSVAGSLLGVDKVKEMQPLMGSEDFAFYQEVFPGYFFLLGMENASVERLESPHSPYYKINEDALPYGAALHASLATRYLLKLNQDVPVVEGKHHDEL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00239 444 Pfam Peptidase family M20/M25/M40 108 422 IPR002933 GO:0016787
Spst5g00239 444 PIRSF Amidohydrol_AmhX 38 430 IPR017439 GO:0016787
Spst5g00239 444 NCBIfam amidohydrolase 51 413 IPR017439 GO:0016787
Spst5g00239 444 CDD M20_IAA_Hyd 51 426 IPR044757 GO:0009850|GO:0016787
Spst5g00239 444 Gene3D Zn peptidases 51 411 - -
Spst5g00239 444 FunFam N-acetyldiaminopimelate deacetylase 216 334 - -
Spst5g00239 444 Gene3D - 216 334 - -
Spst5g00239 444 Pfam Peptidase dimerisation domain 217 314 IPR011650 -
Spst5g00239 444 SUPERFAMILY Zn-dependent exopeptidases 47 427 - -
Spst5g00239 444 SUPERFAMILY Bacterial exopeptidase dimerisation domain 216 335 IPR036264 -
Spst5g00239 444 PANTHER PEPTIDASE M20 FAMILY MEMBER 28 432 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00239 Spst-Chr5 2161424 2164565 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00239 K21604 - gmx:100794121 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00239 5 2161424 2164565 Spst5g00239 5 2161424 2164565 ECH
Spst5g00239 5 2161424 2164565 Spst4g02287 4 63653765 63655826 PCT