Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02287 ATGTGTTCCTTCAAAAAGTGGTTCCATTTGTTCATCATTTTCCATGCCTTGGCTGCAACTCCAATCTTCTCGTTAACAGATTCCTCTGACCAACACTCCACAAACTTTCTGGATATTGCCAAGAAGGCTGAAGTGTTTGATTGGATGGTCAAAATCCGAAGGAAGATTCATGAGAATCCAGAATTGGGTTATGAGGAGTTCAAGACTAGTGAAGTGATTAGAGCAGAGTTGGATAAACTGAGCATCCCATATCAACATCCAGTTGCAGTCACAGGTGTTATTGGGTTCATAGGAACAGGAAGCTCACCATTTGTTGCATTAAGAGCTGACATGGATGCACTTCCAGTTCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTAGCTGGAAAGATGCACGCATGTGGCCATGATGCTCATGTCGCTATGCTTCTTGGTGCAGCAAAGATTCTCAAACAGCATGAAAAAGAGATACATGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATGGTGGAGCCTTAAACAATGTTACTGCCATCTTTGGATTACATGTGCTGCCTACCATTCCAGTTGGTGAAGTGTCTTCTAAAGCTGGTGCAGTATTGGCAGGAGGTGCTGACTTTGAAGCCATTATAAGAGGAAAGGGAGGTCATGCAGCTATTCCCCAACTTTCTATCGACCCTGTAGTTGCAGCTTCGAATGTGGTCATTAGCTTACAAAACATTGTTTCTCGTGAGGCTGATCCTCTTGATCCCCAGGTTTTAACAGTTTCAAAGTTCCAAGGAGGTGGCACCTTCAATGTTATTCCAGATTCTGTCACAATTGGTGGCACATTCCGAGCTTTTTCTACAGAAAGATTGGAGCAACTTAAGCAGCGTATTGAGCAGGTTATCATTGGTGAAGCTGCTGTTCAGAGGTGTAATGCAAGTGTGAACTTTTTTGATGAAGAGAAACCTTTATATCCTCCAACTATAAATGATGGTGATTTGCACAAGCTTTTTGTTGACGTAGCTGGGAATTTGCTTGGTATCAATAACGTTATTACGAACATGCAACCAGACATGGCCTCTGAAGATTTTGCGTTCTATCAAGAGGTCATAGCTGGCTACTATTTCGCGCTTGGAATGAAGAATGGTTCAGCTGATGAACCTGTTCAACCATTACATTCACCATATCTCGTAATCAATGAAGATGGACTTCCCTATGGGGCTGCACTTCATGCATCATTGGTTACTTGTTATCTTACAAAATATCAACACAACATAGCCAAGGTTGAGGGGAAACATCATGATCAATAA 1332 0.4242 MCSFKKWFHLFIIFHALAATPIFSLTDSSDQHSTNFLDIAKKAEVFDWMVKIRRKIHENPELGYEEFKTSEVIRAELDKLSIPYQHPVAVTGVIGFIGTGSSPFVALRADMDALPVQEMVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKQHEKEIHGTVVLVFQPAEEGGGGAKKILDGGALNNVTAIFGLHVLPTIPVGEVSSKAGAVLAGGADFEAIIRGKGGHAAIPQLSIDPVVAASNVVISLQNIVSREADPLDPQVLTVSKFQGGGTFNVIPDSVTIGGTFRAFSTERLEQLKQRIEQVIIGEAAVQRCNASVNFFDEEKPLYPPTINDGDLHKLFVDVAGNLLGINNVITNMQPDMASEDFAFYQEVIAGYYFALGMKNGSADEPVQPLHSPYLVINEDGLPYGAALHASLVTCYLTKYQHNIAKVEGKHHDQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02287 443 SUPERFAMILY Bacterial exopeptidase dimerisation domain 217 324 IPR036264 -
Spst4g02287 443 Gene3D - 214 332 - -
Spst4g02287 443 Pfam Peptidase family M20/M25/M40 106 422 IPR002933 GO:0016787
Spst4g02287 443 NCBIfam amidohydrolase 49 413 IPR017439 GO:0016787
Spst4g02287 443 PIRSF Amidohydrol_AmhX 35 430 IPR017439 GO:0016787
Spst4g02287 443 PANTHER PEPTIDASE M20 FAMILY MEMBER 28 435 IPR017439 GO:0016787
Spst4g02287 443 SUPERFAMILY Zn-dependent exopeptidases 43 427 - -
Spst4g02287 443 Pfam Peptidase dimerisation domain 215 309 IPR011650 -
Spst4g02287 443 Gene3D Zn peptidases 49 410 - -
Spst4g02287 443 FunFam N-acetyldiaminopimelate deacetylase 214 332 - -
Spst4g02287 443 CDD M20_IAA_Hyd 49 426 IPR044757 GO:0009850|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02287 Spst-Chr4 63653765 63655826 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02287 K21604 K14664 gmx:100790664 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00239 5 2161424 2164565 Spst4g02287 4 63653765 63655826 PCT