Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00230 ATGACCAGGTTCCTTAGAACCATCCTTATCGCCCACAAGCTCCACCTTCGCCACCCCAAATGCATTATCCCACCTCTCCTTTCTCACTACTCCGCAACTGCGGATTACTCCGAAGCGCTCGACACACACAAACCAACATACGAAACCTCCACCACAACCAGTTGGAGCAGGTACGGGAACATCTACGGCAGCCCAGATGTGCAGCACAGCGATCACAGCGACGGAGATGAAAACCCTAGCAGTGGGAGGGCAAAGGATGTGGCAATGGAGAAGAAAAAGGGGAAGGGGAAAACACAGTGGGTGTGCTGCGTTTGTGGGCACACGACTGGGATATGGTGGGGAACATGCCCCGAATGCGAAGAAATCGGCACAATGGAAAAGTTTCATGAGAGCAAATTAACTGACAAACCCAGAGGAGGGTTAGCCATTACCGAGTACGCAATGGGGTCGTGGCTCCCAAGACGACCCGAACAGTTCCGCCCCATCAAATTGGAAGAGGTGAACCGTGGATTCAATCACGACAAATGGAGAATTCCTTTGTCTGGTTCCCTTGGACTTGAAGTTTCTACAGTGCTTGGTGGAGGGCTTGTACCAGGTTCTTTAACCTTAGTCGGTGGTGATCCTGGTATTGGGAAAAGTACTCTGTTATTACAGATTTCAGCAATGATAGCAAACGAATGCAGTGATGGTGAAGCACCTCCAGTTGTATATGTCTCTGGTGAAGAGCTGTTGAAGAGCGTTAAGCAAATTTGTTCTAGAGCAGATCGCCTTGGGATTAAGTCTAATATTTATTTATATTCAAGTACTGATATTGAGGATATACTTAGAAAAGCTCATGGTCTATCCCCACGAGCTCTGGTGGTTGATTCAATACAAACTGTTTACCTCAACACAGTAATTGGAAGTGCTGGAGGGGTTATGCAGGTGAAGGAATGCACTGCAGCTTTGATGCGATTTGCAAAAACAACTAACATCTCAGTGTTTGTGATCGGACATGTGACCAAATCAGGTGACATAGCGGGACCTCGTGTCTTGGAGCACATCGTTGATGTTGTTTTGTATATGGAAGGTGAGAAGTACTCTCCGTATCGAATGCTTCGAGCTGTGAAAAATCGCTTTGGTTCCACTGATGAGCTTGCAGTTCTTGAGATGTCAAAGTCAGGACTCCAGGTTGTTTCAAATGCCAGTGAAATGTTTCTCACTCAACAACACTCTGATTCAAATGTTTTAGCTGGACTTGCTATTGCTGTAATAATGGATGGTACAAGAACTTTTTTAGTTGAAATTCAGGCACTTTGCCTTACACATTGCCCAGTTTCGAGTTCACAATCTAATGGGATCCATGCAAACAAAGCTAATATTATTAAATGTGTACTTATGAAGCAAGCAGGTCTTCATCTCCAAGATAATGCTGTTTTTTTGAATGTTGCTAGCGGCTTCACAGTGACAGAGACTTCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCCATTCCAGAGGGGACCGCATTCATTGGTGAAATTGGCCTTGGTGGGGAGCTTCGCATGGTTCCGAGAATTGATAAAAGGGTTAACACATTGGCGAAGTTGGGTTACAGAATGTGTGTAGTACCAAAGCAAGCTGAAAAACTTATACAAAACGAAGGTCCAGGAAAAATGGAAGTTGTAGGTTGCAAGGATCTGAAAGAGGTTATCAACGCTGTATTCAGAAGAGATAATTAA 1740 0.4494 MTRFLRTILIAHKLHLRHPKCIIPPLLSHYSATADYSEALDTHKPTYETSTTTSWSRYGNIYGSPDVQHSDHSDGDENPSSGRAKDVAMEKKKGKGKTQWVCCVCGHTTGIWWGTCPECEEIGTMEKFHESKLTDKPRGGLAITEYAMGSWLPRRPEQFRPIKLEEVNRGFNHDKWRIPLSGSLGLEVSTVLGGGLVPGSLTLVGGDPGIGKSTLLLQISAMIANECSDGEAPPVVYVSGEELLKSVKQICSRADRLGIKSNIYLYSSTDIEDILRKAHGLSPRALVVDSIQTVYLNTVIGSAGGVMQVKECTAALMRFAKTTNISVFVIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSPYRMLRAVKNRFGSTDELAVLEMSKSGLQVVSNASEMFLTQQHSDSNVLAGLAIAVIMDGTRTFLVEIQALCLTHCPVSSSQSNGIHANKANIIKCVLMKQAGLHLQDNAVFLNVASGFTVTETSGDLAIAAAICSSFLEFPIPEGTAFIGEIGLGGELRMVPRIDKRVNTLAKLGYRMCVVPKQAEKLIQNEGPGKMEVVGCKDLKEVINAVFRRDN 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00230 579 Gene3D - 402 579 IPR014721 -
Spst5g00230 579 SMART AAA_5 198 359 IPR003593 GO:0016887
Spst5g00230 579 PRINTS DNA repair protein radA signature 363 389 - -
Spst5g00230 579 PRINTS DNA repair protein radA signature 439 462 - -
Spst5g00230 579 PRINTS DNA repair protein radA signature 102 126 - -
Spst5g00230 579 PRINTS DNA repair protein radA signature 289 313 - -
Spst5g00230 579 PRINTS DNA repair protein radA signature 328 356 - -
Spst5g00230 579 PRINTS DNA repair protein radA signature 190 218 - -
Spst5g00230 579 MobiDBLite consensus disorder prediction 69 92 - -
Spst5g00230 579 Pfam Subunit ChlI of Mg-chelatase 460 546 - -
Spst5g00230 579 NCBIfam DNA repair protein RadA 95 570 IPR004504 GO:0003684|GO:0005524|GO:0006281
Spst5g00230 579 FunFam DNA repair protein RadA 179 390 - -
Spst5g00230 579 FunFam DNA repair protein radA isogeny 408 578 - -
Spst5g00230 579 SUPERFAMILY Ribosomal protein S5 domain 2-like 370 575 IPR020568 -
Spst5g00230 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 384 IPR027417 -
Spst5g00230 579 PANTHER DNA REPAIR PROTEIN RADA 54 577 - -
Spst5g00230 579 Gene3D - 186 396 IPR027417 -
Spst5g00230 579 ProSiteProfiles RecA family profile 1. 177 333 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Spst5g00230 579 Pfam AAA domain 192 337 - -
Spst5g00230 579 CDD RadA_SMS_N 100 392 - -
Spst5g00230 579 MobiDBLite consensus disorder prediction 65 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00230 Spst-Chr5 1992424 2001643 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00230 K04485 - gmx:100791181 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00230 5 1992424 2001643 Spst5g00230 5 1992424 2001643 ECH
Spst5g00230 5 1992424 2001643 Spst4g02300 4 63717236 63725396 PCT