Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02300 ATGATGGGTGGTAGTGATGGTGGGATAGTTATTGGGAGGAAGAAGAAGTCGAAGGAGAAAGTTCAATGGGTTTGTAGCAATTGTGGGTACAGTGCAGGACAATGGTGGGGCGTCTGCCGATCATGCAATGTATCTGGAACTATGAAAGAGGCCAAATTCAGTGATGCTGATGGTGTGGTTAGTGGGTTTTCAGTTTTGGGGGACGGTGTGGGGTCTTGGCTACCGCAACAGGAAGGGGAGTTGCGTCCCTTGAGATTGGCAGAGGTAAACAGGGGACTTGATCATCAACATTGGAGAATTCCTTTATCTGGTCCATTCGGAGATGAAATTTCCAGAGTGCTTGGTGGTGGTTTCGTACCAGGTATAAAGAATTTTTTAGCTGAAAATTGTGAATGGGTAGTGATTATTGGATCATTGACTTTAATTGGTGGTGATCCTGGTGTTGGGAAGAGTACTCTTTTGCTGCAGATTGCTGCAATTATTGCAGAAGGGCACAGTGATGGTGAAGCATCTCCAGTTGTATATGTCTCTGGTGAAGAGAGTGTAGAGCAAATTGGTAACAGAGCAGATCGTCTTAAGATTGAGTCTAATATTTATTTATATTCAAGTAATGATGTTGAGGACATATTGAAGAAAGTTCAGTATCTCTCCCCTGGGGCCCTAATAGTTGATTCAATACAAACTGTGTATTTAAAAGGAATAATGGGAAGTCCTGGTGGGATTATGCAGGTGAAAGAATGTACTTCAGCTTTACTGCGATTCGCGAAGAAGACAAACATCCCAGTTCTTTTGATTGGACATGTGACAAAATCTGGAGACATTGCAGGACCTCGTGTCTTGGAGCATATTGTTGATGTTGTTCTATACATGGAAGTTGGTATCTTGTTACAACTTTCTTTCTTTGAGCACTTAGTGATAACATATGCAAGTATCAATGGTGAGAAGTGCTCGTCCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTCAGGCTGTTTCAAATGCCAGTGAAATGTTTCTCAGTGAGCAACACCTGGATTCTGAAATTTTAGCTGGACTAGCTGTTGCTGTAATCATGGATGGGTCCCGGACATTCCTTATTGAAATTCAGGCACTTTGTCTTTCTAGTTCAACAGGTTCAAGGCAAGTTAATGGTATCCAACTAAATAGAGCTGATATGATCATATCAGTTCTTATAAAGCAAGCAGGTCTTCGTCTCCGAGAACATGCTGTGTTTTTGAATGTTGTTAGTGGATTGACACTGACTGAGACTGCTGGAGATCTTGCTATAGCAGCAGCCATTTGCAGCAGCCAAGTTGAACATATTGTTGCACTCCTGCTTCTTTTTCTACCTTGCTTGGAAATCCCTATTCCAAATGACATTGCATTCATTGGTGAAATTGGCCTTGGTGGAGAGCTTCGCATGGTTCATAGAATGGATAAAAGGGTATATACCGTTGCGAAATTGGGTTTCAGAATGTGCATAGTACCCAAGGTGGCTGAAAAAGCTTTAGGAACTGAAGGTTTAGAAAAGATGAAAGTTGTTGGTTGCAGGAATCTGAAAGAGATCTTCAACTTGGTTAGGTTAATCAATAATCTGGTAATGAAGTTGAGCCAGGCATTGGGAACAAATGAACTTGAGGTGAAGGGTCTTCTCTTTAATACTTACAAAACATCCAACAACATATATTGA 1740 0.4149 MMGGSDGGIVIGRKKKSKEKVQWVCSNCGYSAGQWWGVCRSCNVSGTMKEAKFSDADGVVSGFSVLGDGVGSWLPQQEGELRPLRLAEVNRGLDHQHWRIPLSGPFGDEISRVLGGGFVPGIKNFLAENCEWVVIIGSLTLIGGDPGVGKSTLLLQIAAIIAEGHSDGEASPVVYVSGEESVEQIGNRADRLKIESNIYLYSSNDVEDILKKVQYLSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEVGILLQLSFFEHLVITYASINGEKCSSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSSSTGSRQVNGIQLNRADMIISVLIKQAGLRLREHAVFLNVVSGLTLTETAGDLAIAAAICSSQVEHIVALLLLFLPCLEIPIPNDIAFIGEIGLGGELRMVHRMDKRVYTVAKLGFRMCIVPKVAEKALGTEGLEKMKVVGCRNLKEIFNLVRLINNLVMKLSQALGTNELEVKGLLFNTYKTSNNIY 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02300 579 ProSiteProfiles RecA family profile 1. 110 268 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Spst4g02300 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 340 IPR027417 -
Spst4g02300 579 Gene3D - 111 351 IPR027417 -
Spst4g02300 579 FunFam DNA repair protein radA isogeny 364 547 - -
Spst4g02300 579 SUPERFAMILY Ribosomal protein S5 domain 2-like 326 543 IPR020568 -
Spst4g02300 579 Gene3D - 365 555 IPR014721 -
Spst4g02300 579 PANTHER DNA REPAIR PROTEIN RADA 14 543 - -
Spst4g02300 579 Pfam Rubredoxin metal binding domain 23 50 IPR041166 -
Spst4g02300 579 PRINTS DNA repair protein radA signature 263 291 - -
Spst4g02300 579 PRINTS DNA repair protein radA signature 112 140 - -
Spst4g02300 579 PRINTS DNA repair protein radA signature 224 248 - -
Spst4g02300 579 PRINTS DNA repair protein radA signature 25 49 - -
Spst4g02300 579 Pfam AAA domain 135 272 - -
Spst4g02300 579 SMART AAA_5 136 295 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02300 Spst-Chr4 63717236 63725396 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02300 K04485 - gmx:100794165 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02300 4 63717236 63725396 Spst4g02300 4 63717236 63725396 ECH
Spst5g00230 5 1992424 2001643 Spst4g02300 4 63717236 63725396 PCT