Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00212 ATGGATTTCCGTGCACCGCCGCCATCTCCTGTGGCCTCTGCCAGGCGTTCGTCCTCGCTCTCCAACCACGACGTTTTCCGCCGATTCTTGGAGACTTCTCTCCGTCTCCCAAACATTAACAACCACCATCAAACACCGCTTCCAAAGGTTGACTTCCCCTCCTTATTTTCCGACCATGCTGTTCGTCACGTCGTTTCGGACTCTTTCACAACTGTCGGATGCTTTCAGCTGCTCAACCATGGGATTCCACTGGACGTTACCGCCTCGTCGGCGGAAGCTTCCGTCGGAATTTTCCGGGTGCCGCCGGAGAAGCGAGGCTGCGCGACGAGGTCGGCGGAGAGTCCGTGGGGTTTCGAGGAAGATGACGAGTTCGTGTGGGGAAGAAATAAGGAGTTCAACCTCAGAATGGAGCGACTTTGGCCAGCCGGATATTCCAATTTCAATAAAAAGATGGAGAATCTTGTCACTATGATAGAGAAGGTGGCCGACAAAATTTTGCAAGTGATGTTAGAAGATTGTCCCAAAAAAAATGCTTATTCTGTTGACCTGATTCGCTGGCAACGTGGGACACTTTGTTCTGTTCATAAGCACTGCTCAGATAACATGGGAGGACAATATGCTACCAACTCTCTAGAGTATGATGTGATTAAGATGTTGATTAGGGTAAACCATTACTCTCATTGCTTGTGCTTGCATCTATGTGATGGATCTTCCGAGTTTCAAGTTTACTCCAAGAAAGGTTGGCTCTCTTTCTTCCCAGAAAAAGGAGCCCTAGTAATCACCGCTGGAGACCAAACTCAGTACCAATTAATTGATGGGAAAGAACTACCAATTAACCAGCTTGGCATTGCCTTGTTTCAGTTGTTGAGTGATGGACTCTACAAGCATGTGATTGGAAGGCCAATATATAAAGGTGAGAAAGAGGACTACATTTCAATGACTTTCCTCTATTCTCCGCCAAACAAGAAGGACAATTTTCAAAACAGTAGGGAAAGAACTATTTCACTGGGCATGCAAGTCATATTGGCAATGATTCTGACCCTTGTGTATCATGTTTTGATTTATGTCTATAAAATTTTTGAGTTGTCTTTGTTATGA 1098 0.4563 MDFRAPPPSPVASARRSSSLSNHDVFRRFLETSLRLPNINNHHQTPLPKVDFPSLFSDHAVRHVVSDSFTTVGCFQLLNHGIPLDVTASSAEASVGIFRVPPEKRGCATRSAESPWGFEEDDEFVWGRNKEFNLRMERLWPAGYSNFNKKMENLVTMIEKVADKILQVMLEDCPKKNAYSVDLIRWQRGTLCSVHKHCSDNMGGQYATNSLEYDVIKMLIRVNHYSHCLCLHLCDGSSEFQVYSKKGWLSFFPEKGALVITAGDQTQYQLIDGKELPINQLGIALFQLLSDGLYKHVIGRPIYKGEKEDYISMTFLYSPPNKKDNFQNSRERTISLGMQVILAMILTLVYHVLIYVYKIFELSLL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00212 365 Gene3D - 17 335 IPR027443 -
Spst5g00212 365 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 2 356 - -
Spst5g00212 365 SUPERFAMILY Clavaminate synthase-like 30 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00212 Spst-Chr5 1825113 1827059 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00212 - - pvu:PHAVU_005G166600g 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00212 5 1825113 1827059 Spst5g00212 5 1825113 1827059 ECH
Spst5g00212 5 1825113 1827059 Spst4g02320 4 63940623 63943056 PCT