Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00149 ATGGAGTTGATTTCAGGTCTGCCAGAGGACGTTGCCCGAGACTGTTTAATTAGGGTACCGTACGAGAAATTCGCAGCGGTTGCATCTGTCTGCAAAGGCTGGAACTTGGAGATTCACTCGCCGGAGTTTCACCGGCGGAGGAGAACAACGAAACACGCACAGAAAATCCTCGTCACGGTTCAATCACAGATAGACTCGGAAAAAACCCGAACCGGCATGCTCGCGAAGTCCTCAGCGAATCCGGTTTACCGGTTGAGCGTGTTCGAGCCGGAGACGGGTATGTGGAGCGAGTTGCCCTTAGGACCCGAACTCGCTTCCGGGTTGCCCATGTTCTGTCAGATAGCGGGTGTCGGGTGCGAGCTTGTGGTAATGGGCGGGTGGGACCCAGATTCGTGGAAAGCTTCGAATTCGGTTTTTATCTACAATTTCCTGTCGGCCAAGTGGCGGCGTGGGGCCGACATGCCGGGTGGGCCCCGCACGTTCTTCGCGTGCGCGGCGGATCAAGATCGCACGGTGTACGTCGCGGGCGGGCACGACGAGGAGAAGAACGCGCTGAGGTCAGCGCTTGCGTATGACGTGGCGAACGACGTGTGGGTCGCGCTCCCGGACATGTCCCGCGAGCGCGACGAGTGCAAGGCTGTGTTCCGCCGCGGCGCGCTCTGGGTGGTCGGAGGCTACTGCACGGAGATGCAGGGGCGGTTCGAGGGGAGCGCGGAGGTGTTCGACGTAGCGTCGTGGAGGTGGGGCCCGGTGGCGGAGGAGTTCTTGGATGCAGCCGCGTGTCCTCGCACCTGCGTGGACGGTGGGGATGGTGCGGAAGGGGAAATGTACATGTGCCGCGGCGGCGACGTGGTGGTGTTGCGAGGGGACACGTGGCGAAAGGTGGCAAAGGTGCCGGGTGAGATCCGGAACGTTGCGTGCGTGGGAGTGTGGGAAGGGGCTTTGTTTGTTATTGGGTCGAGTGGGTTCGGGGAACCGCATATGGGCTTTGTGTTGGATCTGAAAACTGGGGCTTGGGCCCGAGTGAAGAGTCCAGAGGAGTACACCGGGCACGTGCAATGTAGTTGCCTTTTGGAAATCTAG 1083 0.6048 MELISGLPEDVARDCLIRVPYEKFAAVASVCKGWNLEIHSPEFHRRRRTTKHAQKILVTVQSQIDSEKTRTGMLAKSSANPVYRLSVFEPETGMWSELPLGPELASGLPMFCQIAGVGCELVVMGGWDPDSWKASNSVFIYNFLSAKWRRGADMPGGPRTFFACAADQDRTVYVAGGHDEEKNALRSALAYDVANDVWVALPDMSRERDECKAVFRRGALWVVGGYCTEMQGRFEGSAEVFDVASWRWGPVAEEFLDAAACPRTCVDGGDGAEGEMYMCRGGDVVVLRGDTWRKVAKVPGEIRNVACVGVWEGALFVIGSSGFGEPHMGFVLDLKTGAWARVKSPEEYTGHVQCSCLLEI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00149 360 Pfam F-box domain 4 45 IPR001810 GO:0005515
Spst5g00149 360 CDD F-box_AtAFR-like 3 47 - -
Spst5g00149 360 Gene3D - 48 358 IPR015915 GO:0005515
Spst5g00149 360 SMART kelc_smart 120 168 IPR006652 GO:0005515
Spst5g00149 360 SMART kelc_smart 171 218 IPR006652 GO:0005515
Spst5g00149 360 SUPERFAMILY Kelch motif 79 344 IPR015915 GO:0005515
Spst5g00149 360 Pfam Kelch motif 115 155 IPR006652 GO:0005515
Spst5g00149 360 Pfam Kelch motif 169 205 IPR006652 GO:0005515
Spst5g00149 360 SUPERFAMILY F-box domain 3 55 IPR036047 GO:0005515
Spst5g00149 360 PANTHER OS02G0208700 PROTEIN 2 360 IPR044595 GO:0080037|GO:2000762
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00149 Spst-Chr5 1430954 1432036 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00149 - - vum:124828606 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00149 5 1430954 1432036 Spst5g00149 5 1430954 1432036 ECH
Spst5g00149 5 1430954 1432036 Spst4g02376 4 64317425 64318492 PCT