Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00130 ATGAAGAAGCAGTGTTGTGAAGAATCAGAGACAAATGTTGGATCCTGGGAATGTTGGTTCGATGATGAATGCATAGTTGACATTGATTACTTTGTAAAGACTCTTTCAAGCATCAAACAGAAGGGTATTCGTGCAGACTTGATTGGTTCCATCATCACTCATTATGCTTCCATTTGGCTTCCTGACCTCTCAGCCTCTGCTGAGAATGGTGTCACCACTCAATTCCAATCCCCAGAAAGCGTCACGAATTCATGGATGAAGAAGAGGTTCTTTGTGGAGACCTTGGTGAATGTTCTGCCTCCCGAGAAGGATTCTGTCCCATGCAACTTCCTCCTTCGTCTTCTCAGAACCGCCAACATGGTTCAGGTTGATGCTACTTATAGAGCTGAGCTTGAGAACCGCATTTCATCGCAGCTAGATCAAGCTTCTCTCAAAGAGCTATTGATACCCTCCTTCAGCCACACCTGTGGAACTCTCTTGGATGTTGAGCTTGTCCTCAGGTTGGTCAAGAGGTTTATGAGCATGGACCGCGATGGTGCTGCTTTGGTTAAGGTGGCCAAGTTGGTTGATTGCTTCCTAGCTGAGGCTGCTGTGGATGCCAATTTGACCTTGTCTGAGTTCCGTGCACTTGCTGGAGTTCTTCCAAGCCATGCAAGAGCAATTGATGATGGCTTGTACAGAGCCATTGACACTTATCTAAAAGCACATCCAAGTGTGACAAAGCAAGAAAGGAAGGGCCTGTGTAGACTGCTTGATAGCAGGAAACTCACACCAGAGGCCTCACTTCATGCAGCTCAAAATGAACGATTGCCTGTGAGAGCTGTGATTCAGGTGCTCTTCTCTGAACAAACCATACTCAACCGCCAGGTAGATTGGAGTGGCTCCTTCAGCTTGAGGAGCCCAAATGGAGGAGGCCATGACCCACTTGGACGGTGCCTTTCAAAGCGAGAAATGAATGCTCAGCAGTTGGAGATAAGGAAGCTGAAGGAAGATGTTTACAGGCTGCAAAACCAGCTCAATGCAATGAAACTGCAGATGGAAAGATTGGCAGTGAAGAAGAAGGGTCTATTCAAATGGAAGAGGTTTGGAATGCCTACATTTAGTAGAAATGTGGGAGAAGTGGAGAAAATTGAAGAAGAAGAGGAGGAAGCTGAAAGAGAAGTTGGATGTGGAAGACAAACGCCTAAGGACACGAAAACCAGTTTGGTCAAAAGTAAGACTCACCACAAGTGGAGAAAATCTTTGTCCTGA 1251 0.4612 MKKQCCEESETNVGSWECWFDDECIVDIDYFVKTLSSIKQKGIRADLIGSIITHYASIWLPDLSASAENGVTTQFQSPESVTNSWMKKRFFVETLVNVLPPEKDSVPCNFLLRLLRTANMVQVDATYRAELENRISSQLDQASLKELLIPSFSHTCGTLLDVELVLRLVKRFMSMDRDGAALVKVAKLVDCFLAEAAVDANLTLSEFRALAGVLPSHARAIDDGLYRAIDTYLKAHPSVTKQERKGLCRLLDSRKLTPEASLHAAQNERLPVRAVIQVLFSEQTILNRQVDWSGSFSLRSPNGGGHDPLGRCLSKREMNAQQLEIRKLKEDVYRLQNQLNAMKLQMERLAVKKKGLFKWKRFGMPTFSRNVGEVEKIEEEEEEAEREVGCGRQTPKDTKTSLVKSKTHHKWRKSLS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00130 416 ProSiteProfiles NPH3 domain profile. 17 285 IPR027356 -
Spst5g00130 416 Pfam NPH3 family 18 261 IPR027356 -
Spst5g00130 416 MobiDBLite consensus disorder prediction 376 416 - -
Spst5g00130 416 MobiDBLite consensus disorder prediction 386 404 - -
Spst5g00130 416 Coils Coil 367 394 - -
Spst5g00130 416 Coils Coil 318 352 - -
Spst5g00130 416 PANTHER OS12G0117600 PROTEIN 17 381 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00130 Spst-Chr5 1218817 1221066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00130 19 348 EF-hand Containing Proteins AT3G44820 30.481 1.89e-47 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00130 - - gmx:100777820 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00130 5 1218817 1221066 Spst5g00130 5 1218817 1221066 ECH
Spst5g00130 5 1218817 1221066 Spst4g02389 4 64427224 64429094 PCT