Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02389 ATGCTCAAGACAGCTACTACACCAACTGGTTCCTCTTCTACTAGTCTATTTGAGCTTCTCACCGAAATGAAGAACCAATCCTGTCCAGAATCACTCACCTTACAAGCAAAATCTCCCTCCCAATACACCTCCGAATGCTGGTTCGACGATGCATGTATCTTGGACATGGATTACTTCGTGAAGACCCTTTCTGGCATCAAGGCCAAAGGTGTTCGTGCAGACCTTATTGGCTCCATCATCACACACTATGCCTCCAAATGGCTCCCTGATCTTTCTGCAGGTGATATGGCCGAGAAGGGTCTCACCCAATTCGAGGAATCGCCCGAAAGCGTGACGGCTTCATGGATGAAGAAGAGGTTCTTCGTGGAAACCTTGGTGGGTGTTCTGCCTCCTGAGAAGGATGCAATTCCATGCAACTTTCTGCTTAGGCTTCTGAGAACGGCCAACATGGTTGGGGTTGAGGGTACCTACAGGCAAGAGCTTGAGAAGCGTATTTCGTGGCAGTTGGACCAGGCTTCGTTGAAGGAGTTGGTCATTCCATCTTTCAGCCACACTTGTGGGACTCTCTTGGATGTTGAGCTTGTCATTAGGCTGGTTCAGAGGTTTGTGAGTTTGGACAGTGAGGGAGCTAAGAGTGTTGCTTCTTTGGTTAAGGTGGCTAAGTTGGTTGATTCCTACCTGGCTGAGGCTGCTGTGGATGCCAATTTGAGCTTGAACGACTTTGTTATCCTTGCCGCAGCTCTTCCTAGCCATGCAAGAGCAACGGATGATGGCTTGTACAGAGCCATTGATACTTATCTTAAAGCACATCCAGGAGTGTCAAAGCAAGAAAGGAAGGGTCTGTGCAGGTTAATTGACAGCAGAAAACTGACCCCAGAGGCATCACTCCACGCAGCACAAAACGAACGTTTCCCAGTGAGAGCAGTGATTCAGGTGCTGCTTTCTGAGCAAAGCAAACTGACACGTCACGTGGATTGGAGCGGTTCGTTGGTGAGTGGGACAAGAAGCCCTAGTGGGTTGGAGTTACCAACACGGTGTCTCTCGAAGCGCGAGGTGAACGCGCAACAGCACGAGATAAGGAAGCTGAAGGATGATGTGTACAGGTTGCAGAGCCAGTGCAATGCCATGCAGGCACAAATGGAGAGAATGGTGGAGAAGAAGAAGGGGTTCTTCAAGTGGAAGAAGTTTGCGTTTGGCAAAGGTGAACATGACAGAGTGGAACATGAGCTTGAAGGGAATGGAATTCAAACGCCAGCGAACCTTAAAACCAGATTGGTTAATGTGAAAGGTAGTAAGAATAATAATTCTCACAAGTGGAGGAAATCCATGTCTTGA 1335 0.4846 MLKTATTPTGSSSTSLFELLTEMKNQSCPESLTLQAKSPSQYTSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLSAGDMAEKGLTQFEESPESVTASWMKKRFFVETLVGVLPPEKDAIPCNFLLRLLRTANMVGVEGTYRQELEKRISWQLDQASLKELVIPSFSHTCGTLLDVELVIRLVQRFVSLDSEGAKSVASLVKVAKLVDSYLAEAAVDANLSLNDFVILAAALPSHARATDDGLYRAIDTYLKAHPGVSKQERKGLCRLIDSRKLTPEASLHAAQNERFPVRAVIQVLLSEQSKLTRHVDWSGSLVSGTRSPSGLELPTRCLSKREVNAQQHEIRKLKDDVYRLQSQCNAMQAQMERMVEKKKGFFKWKKFAFGKGEHDRVEHELEGNGIQTPANLKTRLVNVKGSKNNNSHKWRKSMS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02389 444 PANTHER OS12G0117600 PROTEIN 26 413 IPR043454 -
Spst4g02389 444 Coils Coil 352 379 - -
Spst4g02389 444 Pfam NPH3 family 46 295 IPR027356 -
Spst4g02389 444 ProSiteProfiles NPH3 domain profile. 45 319 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02389 Spst-Chr4 64427224 64429094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02389 44 388 EF-hand Containing Proteins AT3G44820 32.982 8.98e-54 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02389 - - gmx:100793820 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02389 4 64427224 64429094 Spst4g02389 4 64427224 64429094 ECH
Spst5g00130 5 1218817 1221066 Spst4g02389 4 64427224 64429094 PCT