Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00107 ATGGAAAGCATAACAGAGGGAGTGAACAACATCAACATCGCCGATTCCTACAAGAAGAATCGCATTCAGGTTTCAAACACCAAGAAGCCCCTCTTCTTCTACGTTAATCTCGCCAAGAGATATATGCAACAGCATAACGAGGTCGAGCTCTCAGCCCTGGGAATGGCTATTGCCACAGTGGTAACCGTTGCTGAAATATTGAAGAACAACGGCCTTGCTGTTGAGAAGAAGATCACGACATCAACTGTTGACATAAAGGACGATTCTAGAGGTAGACCTGTTCAAAAGGCCAAGATTGAAATTGTACTTGGGAAGACTGCAAACTTCGACGAATTGATGGCTGCTGCAGCTGCTGAAGACGGTGAGAATGGAGACGCCGAAGAACCAAGCGCATGA 396 0.4621 MESITEGVNNINIADSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEIVLGKTANFDELMAAAAAEDGENGDAEEPSA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00107 131 PANTHER DNA/RNA-BINDING PROTEIN ALBA 3 1 122 IPR014560 -
Spst5g00107 131 FunFam Uncharacterized protein At2g34160 18 130 - -
Spst5g00107 131 Pfam Alba 20 82 IPR002775 GO:0003676
Spst5g00107 131 Gene3D - 18 128 IPR036882 GO:0003676
Spst5g00107 131 SUPERFAMILY AlbA-like 19 114 IPR036882 GO:0003676
Spst5g00107 131 PIRSF UCP030333_Alba 1 131 IPR014560 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00107 Spst-Chr5 1030776 1033052 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00107 - - gmx:100527472 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00107 5 1030776 1033052 Spst5g00107 5 1030776 1033052 ECH
Spst5g00107 5 1030776 1033052 Spst4g02408 4 64536042 64538104 PCT