Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00079 ATGTCTGCTGCCGTGTGCGGAAACAAGAGATCTTTGTTCGACGAACTTCCCCCTTCTCCGCCAGTATCCAAGAGGCTCCGCTGTTCTTCTTCCCCAATTCGCCTCTCTTTCCCTTCCCTCATCGACCACCTTCGCCCCCTCTTCCCTCATATGGATGACCAGATCCTCGAGAAAGCCCTTCAAGATTGTGGTAATGACCTAGATGCTGCCATCAAGAGCCTCCACGGCCTCTGTTTGGGATCTGCCGATGATAATTCTCAAACTGCTCCTCAACCTCACCCTGACGTCGTCCACGAAGGTGCGTTGAAAGAGAATGGGGATGCTGCTTCTGCTTCTGTTTCTGGGGATCAGCCTGCTGCTGGCAACTTTCCTGCGGATGGAGCGGAATGGATTGACTTGTTTGTTAGAGAGATGACGTGTGCTACCAGCGTTGATGATGCCAGAGCTCGCGCTACTAGATTGCTGGAAGTTTTAGAGAAATCAATCAGTACACACGCCAGTGCTGGGGCAACAACCGCCCTTCAAAGAGAAAATTTGATGCTGAAGGAGCAAATTGAAGCCCTGACTAAGGAGAAAAATTGCTTTAAAAGTGCTTTTAGAATCCAGCTTGAACGGCTTTCCGACTATGAGAATAAAAACCATGAGCTGCAGCAGTTAAAGCAGTTGGTGTCTCAATATCAGGAGCAGATCAGAACTCTTGAGGTGAATAACTATGCTTTGAGAATGCATTTGAATCAGGCACAACAGTACAACTCTTTTCCTGGGCGTTTTCCTCCTGATGCCTTCTAG 789 0.4854 MSAAVCGNKRSLFDELPPSPPVSKRLRCSSSPIRLSFPSLIDHLRPLFPHMDDQILEKALQDCGNDLDAAIKSLHGLCLGSADDNSQTAPQPHPDVVHEGALKENGDAASASVSGDQPAAGNFPADGAEWIDLFVREMTCATSVDDARARATRLLEVLEKSISTHASAGATTALQRENLMLKEQIEALTKEKNCFKSAFRIQLERLSDYENKNHELQQLKQLVSQYQEQIRTLEVNNYALRMHLNQAQQYNSFPGRFPPDAF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00079 262 CDD CUE 39 74 - -
Spst5g00079 262 SUPERFAMILY UBA-like 36 81 IPR009060 GO:0005515
Spst5g00079 262 Coils Coil 209 236 - -
Spst5g00079 262 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 262 - -
Spst5g00079 262 Pfam CUE domain 38 73 IPR003892 GO:0043130
Spst5g00079 262 Gene3D - 23 82 - -
Spst5g00079 262 ProSiteProfiles CUE domain profile. 36 82 IPR003892 GO:0043130
Spst5g00079 262 Coils Coil 171 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00079 Spst-Chr5 886055 887982 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00079 - - gmx:100815998 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00079 5 886055 887982 Spst5g00079 5 886055 887982 ECH
Spst5g00079 5 886055 887982 Spst4g02428 4 64695527 64698912 PCT