Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00066 ATGTCATCTCTCAGTAGGGAGTTGGTGTTCTTGATCCTGCAGTTCCTGGATGAGGAAAAGTTCAAAGAAACTGTTCATAAACTTGAGCAGGAGTCCGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGTAATTGGGATGAGGTTGAGAGGTACCTCTCTGGTTTCACTAAAGTAGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAAAAGTACCTGGAGGCCTTGGATAAGCACGATCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTCTTTGCCACATTTAATGAAGAACTGTTTAAGGAAATTACACAGCTTTTGACATTGGAGAATTTTAGGGAGAACGAACAGTTGTCCAAGTATGGTGATACAAAGTCTGCAAGGGCAATCATGTTGGTTGAGCTCAAAAAGTTGATTGAGGCCAATCCCTTATTTCGCGACAAATTGCAATTTCCAAACCTTAAAAACTCAAGGTTGCGGACTCTCATCAATCAAAGCTTAAATTGGCAGCATCAACTTTGTAAGAACCCCCGGCCAAATCCAGATATAAAAACACTTTTTGTGGATCACTCGTGTGGTCAACCAAATGGTGCACGGGCTCCTTCCCCTGCTAACAATCCACTGCTCGGATCATTACCAAAGGCTGGAGGATTTCCTCCTCTTGGTGCGCATGGGCCTTTTCAACCAACTCCAGCTCCAGTGCCAACACCCTTGGCTGGTTGGATGTCAAATCCAACTACTGTAGCACATCCTGCAGTCTCTGGAGGAGCTATAGGTCTTGGTGCACCATCAATCCCTGCTGCTTTGAAGCACCCTAGGACCCCTCCAACTAATCCCTCTGTTGACTATCCATCTGGTGATTCAGATCATGTTTCTAAGAGAACAAGACCAATGGGAATATCAGATGAGGTAAATCTGCCTGTCAATGTTTTGTCAGCTACATTCCCTGGTCATGGTCATGGTCAGGCTTTTAATGCACCTGATGACTTGCCAAAGACTGTCATGCGAACCCTGAATCAAGGCTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAGACACTGCTTCTTGTTGGTACGAATGTGGGGGAAATTGCTTTGTGGGAAGTGGGCTCTAGGGACCGGTTGCTCATGAAGAGCTTTAAAGTGTGGGATCTTAGTGCTTGTTCAATGCCCTTTCAGGCTGCTCTTGTTAAAGATCCAGGCGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGGGCTTTATTTGGAGTTGCTTACTCAAGGAACATTGTTCAGATTTACTCTTACCATTGTGGGGATGATGTTCGACAACATCTGGAGATTGATGCTCATGTTGGTGGAGTAAACGATCTAGCATTTTCCCACCCTAATGAGAAACTATGTGTCATAACCTGTGGTGATGATAAGACCATTAAGGTTTGGGATGCTGCTATGGGTACAAAACAGTATACATTTGAAGGTCATGAGGCTCCAGTTTATTCTGTTTGTCCACATTATAAAGAAAACATTCAGTTCATCTTTTCCACGGCATTAGATGGAAAGATAAAAGCATGGTTGTATGATAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGTACAACCATGGCCTATAGTGCTGATGGAACAAGACTTTTTTCATGTGGGACAAGTAAGGATGGGGAATCCTCTATTGTGGAGTGGAATGAAAGTGAAGGAGCAGTGAAAAGGACTTATCAAGGATTTCGGAAACGATCTTTGGGTGTTGTACAATTTGATACAACCAAAAATCGATATTTGGCTGCAGGTGATGATTTCTCCATTAAATTCTGGGACATGGACAATATTCAGCTTTTAACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCACGAATCCGTTTTAACAAGGATGGAGCTCTTTTGGCTGTTTCTGCAAATGAGAATGGAATCAAAATCTTAGCCAATACAGATGGTATTCGATTGTTACGAACATTAGAGAATTCTTTGTATGATACGTCCAGAGCGGCAGAAGCCATGACAAAGCCTACAATAAATCCAATATCAGCTGCTGCCACTGTTGCAGCAACTAGTGCTGCACTTGCAGAGAGGGCCTCATCTGTGGTAGCTATTACTGCAATGAATGGAGATGCTCGAAATTTGGGTGATGTTAAACCTAGAATTAGCGAAGAATCCAATGATAAATCAAAGATATGGAAGCTCACTGAAATCAATGAACAGTCTCAATGTAGATCCTTGAAGCTACCTGAGAATGTTAGAGTGAACAAGATATCAAGGTTGATATATACTAATTCAGGTAATGCTATTCTGGCATTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGCAGTGACCGGAATTCAACTGGAAAGGCCACTGCTAATGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTGATGACTAATGACATTACTGATAGCAATACTGAGGATGCCGTTCCCTGCTTTGCTCTATCAAAAAATGATTCTTATGTAATGTCAGCATCAGGAGGGAAGATTTCTCTGTTTAATATGATGACTTTTAAGACAATGACAACATTCATGCCCCCACCCCCTGCAGCAACTTTTCTTGCTTTCCATCCTCAGGATAATAATATTATTGCTATAGGCATGGATGATTCTTCCATTCAAATATATAATGTCCGTGTAGATGAGGTTAAAAGTAAACTCAAAGGTCATACTAAAAGAATAACTGGTCTTGCTTTTTCCCATGTATTGAATGTGTTAGTTTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGACGGATGGGAAAAGCAGAAGTCTAGATTTTTGCAACAACCTCCTGGGAGGACTCCACCAGCCCAGGCAGATACCCGTGTACAGTTTCATCAGGATCAGATGCGCTTCTTGGTTGTACATGAAACTCAGCTTGCCATTCATGAAGCTACAAAACTAGAATGTTTAAAGCAGTGGTTCCCACGAGAATCTGCGGCCCCAGTATCACATGCAACTTTCTCATGTGATAGCCAGCTCATATATGCAAGCTTTTTAGATGCAACAATCTGTGTATTTAGTGCTTCAAACCTTAGATTACGATGTCGAATCAATCCTTCTGCTTATCTTTCAGCCAGTGTCAGTTCTAATGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAATCAGTTTGCAGTAGGATTGTCAGACGGTGGAGTTCATGTCTTTGAGCCCCTTGAGTCTGAAGGCAAATGGGGTGTGCCTCCACCCAATGAGAATGGGTCAACGAGCAATATGGCAGCTACTTCAGTTGGTGCTTCTTCAGATGAAGCTCAGAGATGA 3402 0.4253 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVSKRTRPMGISDEVNLPVNVLSATFPGHGHGQAFNAPDDLPKTVMRTLNQGSSPMSMDFHPVQQTLLLVGTNVGEIALWEVGSRDRLLMKSFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRNIVQIYSYHCGDDVRQHLEIDAHVGGVNDLAFSHPNEKLCVITCGDDKTIKVWDAAMGTKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLAVSANENGIKILANTDGIRLLRTLENSLYDTSRAAEAMTKPTINPISAAATVAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEQSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRSDRNSTGKATANVQPQLWQPSSGILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQLCVWNTDGWEKQKSRFLQQPPGRTPPAQADTRVQFHQDQMRFLVVHETQLAIHEATKLECLKQWFPRESAAPVSHATFSCDSQLIYASFLDATICVFSASNLRLRCRINPSAYLSASVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPNENGSTSNMAATSVGASSDEAQR 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00066 1133 Pfam WD domain, G-beta repeat 456 490 IPR001680 GO:0005515
Spst5g00066 1133 Pfam WD domain, G-beta repeat 919 952 IPR001680 GO:0005515
Spst5g00066 1133 ProSiteProfiles Trp-Asp (WD) repeats profile. 920 961 IPR001680 GO:0005515
Spst5g00066 1133 MobiDBLite consensus disorder prediction 283 305 - -
Spst5g00066 1133 SMART Lish 4 36 IPR006594 GO:0005515
Spst5g00066 1133 MobiDBLite consensus disorder prediction 1110 1133 - -
Spst5g00066 1133 SMART WD40_4 913 952 IPR001680 GO:0005515
Spst5g00066 1133 SMART WD40_4 343 382 IPR001680 GO:0005515
Spst5g00066 1133 SMART WD40_4 493 534 IPR001680 GO:0005515
Spst5g00066 1133 SMART WD40_4 870 910 IPR001680 GO:0005515
Spst5g00066 1133 SMART WD40_4 583 623 IPR001680 GO:0005515
Spst5g00066 1133 SMART WD40_4 404 443 IPR001680 GO:0005515
Spst5g00066 1133 SMART WD40_4 449 490 IPR001680 GO:0005515
Spst5g00066 1133 SMART WD40_4 1004 1045 IPR001680 GO:0005515
Spst5g00066 1133 SMART WD40_4 1058 1097 IPR001680 GO:0005515
Spst5g00066 1133 SMART WD40_4 830 867 IPR001680 GO:0005515
Spst5g00066 1133 SMART WD40_4 537 580 IPR001680 GO:0005515
Spst5g00066 1133 FunFam Topless-related protein 3 739 973 - -
Spst5g00066 1133 Gene3D - 773 1107 IPR015943 GO:0005515
Spst5g00066 1133 SMART ctlh 34 92 IPR006595 -
Spst5g00066 1133 Gene3D - 549 689 IPR015943 GO:0005515
Spst5g00066 1133 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Spst5g00066 1133 MobiDBLite consensus disorder prediction 1100 1133 - -
Spst5g00066 1133 Gene3D - 325 545 IPR015943 GO:0005515
Spst5g00066 1133 SUPERFAMILY WD40 repeat-like 835 1098 IPR036322 GO:0005515
Spst5g00066 1133 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1117 IPR027728 GO:0006355
Spst5g00066 1133 SUPERFAMILY WD40 repeat-like 350 671 IPR036322 GO:0005515
Spst5g00066 1133 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 632 IPR001680 GO:0005515
Spst5g00066 1133 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Spst5g00066 1133 ProSiteProfiles Trp-Asp (WD) repeats profile. 456 499 IPR001680 GO:0005515
Spst5g00066 1133 FunFam Topless-related protein 1 323 541 - -
Spst5g00066 1133 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 920 952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00066 Spst-Chr5 761287 769289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00066 454 667 Miscellaneous Gene Families AT5G08390 24.201 9.42e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00066 - - gmx:100790282 2177.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02444 4 64791325 64798965 Spst5g00066 5 761287 769289 ECH
Spst5g00066 5 761287 769289 Spst5g00066 5 761287 769289 ECH
Spst4g02444 4 64791325 64798965 Spst5g00066 5 761287 769289 PCT