Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02444 ATGGGACCCCCTCTGAGAAACTTTGTCGTTACCGGGGATCTTAACCCAGTAAAAGTCGCTTTCTCAGCAACTATCCACGCCTTTCCTCTACCCTTCAATATCACATCTTCACCCTTTGATCTGCCACATCATCAACTCAAGGAACCTGAGCCTAACATCCAACGTGTGTATCTAATCCAAGACGAGGGAGTTCCGATGTCGTCTCTTAGTAGAGAATTGGTGTTCTTGATCTTGCAGTTTCTCGATGAGGAAAAGTTCAAAGAGACTGTGCACAAGCTTGAGCAGGAATCAGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGGAATTGGGATGAGGTGGAGAAATACCTCTCTGGTTTCACCAAGGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCTTTAGATAAGCATGACCGGTCCAAGGCCGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAATGAAGAATTGTTCAAGGAAATCACACAGCTTCTAACATTGGAAAACTTTAGGGAAAATGAACAACTGTCTAAGTATGGCGATACAAAGTCTGCGCGAGCAATTATGTTGGTTGAGCTCAAAAAGCTCATCGAAGCAAATCCCTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGATTACGGACTCTAATTAATCAAAGCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCTGATATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCTAATAACCCGCTACTGGGATCCTTACCAAAGGCTGGAGGGTTTCCTCCATTAGGTGCACATGGGCCTTTTCAGCCTACTCCAGCACCAGTGCCAACGCCCCTGGCTGGTTGGATGTCAAATCCTACCACTGTAGCACATGCTGCAGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCGATCCCTGCTGCTTTGAAGCATCCTAGGACCCCCCCAACTAATCCTTCTGTCGACTATCCATCGGGTGACTCAGAACATGTTGCTAAGAGAACAAGGCCAATGGGAATTTCGGATGAGGTGAATCTACCTGTCAATGTGTTATCAGCCACATTCCCAGGTCATGGTCAGCACAGTCAAGCTTTTAATGCACCTGATGACATACCTAAGGCTGTTGTGCGAACTCTTAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAATTCAACAATCTTTACTTCTTGTTGGTACAAATGTGGGGGAGATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGTTTGGTTTCAAGGAGCTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTGAAAGATCCAGGTGTTTCTGTAAACCGTGTGATTTGGAGTCCTGATGGTTCTTTATTTGGAGTTGCTTACTCAAGGTACATTGTTCAGATATACTCTTACCATGGTTCAGATGATATACGACAGCACTTGGAGATTGATGCTCATGTCGGCGGTGTAAATGATCTAGCATTTTCCCACCCAAATAAGCAACTATGTGTGATAACTTGTGGTGATGATAAGACCATTAGGGTTTGGGATGCTGCTACGGGTATAAAACAGTATACTTTTGAAGGTCACGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCGTGGCTGTATGACAATCTGGGATCCCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACACGGCTCTTTTCATGTGGTACAAGCAAAGATGGAGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTTCGTAAGCGATCTCTAGGTGTTGTGCAATTTGATACTACCAAAAATCGATTCTTAGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGTCCACGAATTCGTTTCAATAAGGATGGAACACTTTTAGCTGTCTCTGCAAATGAGAATGGAATCAAAATTTTAGCCAATGGGGATGGTATTCGATTGTTGCGCACACTAGAGAATTCTTTATATGATGCGTCTAGAGCATCGGAAGCCTTGACAAAGCCGACAATTAATCCAATTTCTGCTGCTGCTGCTGCTGCCACTAGTGCTGCACTGGCAGAGAGGGCTTCATCTGTAGTAGCTATAGCTGGAATGAATGGGGATACTCGAAACATGGGAGATGTTAAACCTAGAATAAGTGAAGAATCCAATGACAAGTCAAAGGTATGGAAGCTCACTGAAATCAATGAACAATCTCAATGTAGGTCCTTGAAGCTACCAGAGAATGTGAGAGTAACTAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCTTTAGCATCAAATGCCATTCACCTGCTCTGGAAGTGGCAGAGAAATGATCGTAACTCATCTGGCAAGGCCACTGCTACCTTGCAACCTCAATTGTGGCAACCATCCAGTGGCATCCTGATGACAAATGACATTGCGGATAGCAATCCTGAGGATGCTGTACCCTGCTTTGCATTGTCCAAAAATGACTCATATGTAATGTCTGCATCAGGGGGGAAGATATCTCTCTTCAATATGATGACTTTTAAGACTATGACGACTTTCATGCCTCCACCACCTGCGGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAACATTATTGCTATAGGGATGGATGATTCCTCTATTCAAATATATAATGTTCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATACTAAGAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTGTTAGTATCATCTGGAGCAGATGCTCAGATTTGTGTTTGGAATACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTCCTGGTAGGACACCACCAGCTCAGTCAGATACCCGTGTACAGTTTCACCAAGATCAAATACATTTCCTGGTTGTGCATGAAACTCAGCTTGCCATTTATGAAACAACAAAACTAGAAGTTCTAAAGCAGTGGTGCCCGCGAGATTCATCTGCACCAATATCGCATGCAACTTTCTCCTGTGATAGCCAGCTTATATATGCCAGCTTTTTAGACGCAACAATCTATGTATTTAGTGCTTCAAATCTCAGATTACGTTGTCGTATCAATCCTTCTGCATATCTTCCTACGAGTGTCAGTTCCAACGTACAACCACTCGTAATTGCGGCTCACCCACAAGAGCCAAATCAGTTTGCTGTAGGACTGTCGGATGGTGGAGTTCATGTTTTTGAACCCCTTGAGTCTGAAGGCAAGTGGGGTGTGCCTCCTCCGATTGAGAATGGGTCAGCAAGCACCGTGGCAGCTACTTCAGTTGGACCTTCCTCAGATCAAGCTCAAAGATGA 3600 0.4314 MGPPLRNFVVTGDLNPVKVAFSATIHAFPLPFNITSSPFDLPHHQLKEPEPNIQRVYLIQDEGVPMSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSEHVAKRTRPMGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKAVVRTLNQGSSPMSMDFHPIQQSLLLVGTNVGEIALWEVGSRERLVSRSFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGSLFGVAYSRYIVQIYSYHGSDDIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIRVWDAATGIKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYDASRASEALTKPTINPISAAAAAATSAALAERASSVVAIAGMNGDTRNMGDVKPRISEESNDKSKVWKLTEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIHFLVVHETQLAIYETTKLEVLKQWCPRDSSAPISHATFSCDSQLIYASFLDATIYVFSASNLRLRCRINPSAYLPTSVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASTVAATSVGPSSDQAQR 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02444 1199 ProSiteProfiles LIS1 homology (LisH) motif profile. 69 101 IPR006594 GO:0005515
Spst4g02444 1199 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 986 1018 - -
Spst4g02444 1199 SMART ctlh 99 157 IPR006595 -
Spst4g02444 1199 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 588 1168 IPR011047 -
Spst4g02444 1199 ProSiteProfiles Trp-Asp (WD) repeats profile. 668 699 IPR001680 GO:0005515
Spst4g02444 1199 Gene3D - 386 612 IPR015943 GO:0005515
Spst4g02444 1199 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 66 1181 IPR027728 GO:0006355
Spst4g02444 1199 ProSiteProfiles Trp-Asp (WD) repeats profile. 986 1027 IPR001680 GO:0005515
Spst4g02444 1199 FunFam Topless-related protein 3 805 1039 - -
Spst4g02444 1199 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 99 157 IPR006595 -
Spst4g02444 1199 Gene3D - 613 797 IPR015943 GO:0005515
Spst4g02444 1199 MobiDBLite consensus disorder prediction 1170 1199 - -
Spst4g02444 1199 Gene3D - 838 1194 IPR015943 GO:0005515
Spst4g02444 1199 SMART Lish 69 101 IPR006594 GO:0005515
Spst4g02444 1199 FunFam Topless-related protein 1 389 608 - -
Spst4g02444 1199 SMART WD40_4 410 449 IPR001680 GO:0005515
Spst4g02444 1199 SMART WD40_4 650 690 IPR001680 GO:0005515
Spst4g02444 1199 SMART WD40_4 896 933 IPR001680 GO:0005515
Spst4g02444 1199 SMART WD40_4 560 601 IPR001680 GO:0005515
Spst4g02444 1199 SMART WD40_4 516 557 IPR001680 GO:0005515
Spst4g02444 1199 SMART WD40_4 979 1018 IPR001680 GO:0005515
Spst4g02444 1199 SMART WD40_4 1070 1111 IPR001680 GO:0005515
Spst4g02444 1199 SMART WD40_4 471 510 IPR001680 GO:0005515
Spst4g02444 1199 SMART WD40_4 1124 1163 IPR001680 GO:0005515
Spst4g02444 1199 SMART WD40_4 936 976 IPR001680 GO:0005515
Spst4g02444 1199 SMART WD40_4 604 647 IPR001680 GO:0005515
Spst4g02444 1199 Pfam WD domain, G-beta repeat 985 1018 IPR001680 GO:0005515
Spst4g02444 1199 Pfam WD domain, G-beta repeat 523 557 IPR001680 GO:0005515
Spst4g02444 1199 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 411 636 IPR011047 -
Spst4g02444 1199 MobiDBLite consensus disorder prediction 1181 1199 - -
Spst4g02444 1199 ProSitePatterns Trp-Asp (WD) repeats signature. 544 558 IPR019775 -
Spst4g02444 1199 ProSiteProfiles Trp-Asp (WD) repeats profile. 523 566 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02444 Spst-Chr4 64791325 64798965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02444 521 734 Miscellaneous Gene Families AT5G08390 23.288 2.01e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02444 - - gmx:100795759 2186.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02444 4 64791325 64798965 Spst5g00066 5 761287 769289 ECH
Spst4g02444 4 64791325 64798965 Spst4g02444 4 64791325 64798965 ECH
Spst4g02444 4 64791325 64798965 Spst5g00066 5 761287 769289 PCT