Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03472 ATGGGTGCCAGCCGGAGAAAGAGCGAGGAACCGAAGGCCACGATGGATCACGTGTTGTTAGCGTCAGGTGAAAGCGCGCATCAGAGAGAGGCACGGATTCGCACCCTCTTCGGGTTCTTTGACGCGCATGGGCGCGGCTACTTGGACCACGCGCTGATCGAGAGGGGGCTTGCGGCGCTGGGAATGCCCTCGGAGAGCGACTATTCGCAGGACTTGCTAGGCGCGTGGGACGCCGACAAGGACGGGCGAGTGGAGTACGGAGAGTTCAAGATGTACATGGAGAAGAAAGAGGTGGAACTGTATCGGATATTTCAGGCCATCGATGTGGAGCACAGTGGGTGTATTTCGCCCGAGGAGCTCTGGCACGCGCTTGTGAGAGCAGGGATTCAGATAGATGATGTGGAACTTGCCCGATTTGTTGAGCGCGTTGACAAGGATCATAATGGGGTTATAACATTTGGAGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCAACAATTGAGAACATTTATCATTACTTGGAGCGTGTATGCCTAGTTGATATTGGGGAACAAACTGTTATTCCAGCAGGCATTAGCAAGCACATCCATGCAAGTAGCTATCTAATTGCAGGAGGTGTAGCAGGTGCTGCATCACGTACAACAACTGCACCCCTTGATCGTTTGAAGGTTGTGTTGCAAGTGCAAACAACACGAGCTCATATAATGCCTGCAGTAAAATATATATGGAAAGAAGGTGGTTTCTTAGGATTTTTTCGAGGCAATGGCATAAATGTTCTTAAGGTGGCCCCTGAGAGTGCTATTAGATTTTACACCTATGAGATGCTAAAGACCTTCATTGTGAATGCTAAAGGAGAAGGGACAAAGGCCGATGTTGGTACTATGGGACGACTTCTAGCTGGTGGTATGGCTGGTGCTGTAGCTCAAACTGCAATATATCCTCTGGATCTTGTTAAAACACGAATACAAACTCATGCTTGTGAAGGTGGAAAATTTCCCAGTCTTGGAACCCTCTCAAAAGATATATGGGTTAAGGAAGGACCCCGTGCATTATATAAGGGTTTGATTCCTTCTATTCTGGGAATTATCCCATATGCTGGCATAGATCTTGCTGCATATGAATCATTGAAAGACATGTCCAAGAAATATATTCTTCATGATGAAGAAGCTGGTCCTCTTGTACAATTAGGATGTGGGACGGTATCAGGTGCCCTTGGAGCAACCTGTGTTTACCCATTGCAGGTTGTTAGAACAAGAATGCAAGCTCAACGGGCTTATATGGGGATGGCAGATGTATTCAAGAGAACTTTTAAACATGAAGGGTTAAGGGGATTCTACAAAGGCTTATTTCCTAACCTGCTCAAAGTTGTTCCATCTGCTAGTATCACTTATTTGGTGTATGAGAATATGAAAAAAGGCTTGGATTTGGAGTGA 1440 0.4646 MGASRRKSEEPKATMDHVLLASGESAHQREARIRTLFGFFDAHGRGYLDHALIERGLAALGMPSESDYSQDLLGAWDADKDGRVEYGEFKMYMEKKEVELYRIFQAIDVEHSGCISPEELWHALVRAGIQIDDVELARFVERVDKDHNGVITFGEWRDFLLLYPHEATIENIYHYLERVCLVDIGEQTVIPAGISKHIHASSYLIAGGVAGAASRTTTAPLDRLKVVLQVQTTRAHIMPAVKYIWKEGGFLGFFRGNGINVLKVAPESAIRFYTYEMLKTFIVNAKGEGTKADVGTMGRLLAGGMAGAVAQTAIYPLDLVKTRIQTHACEGGKFPSLGTLSKDIWVKEGPRALYKGLIPSILGIIPYAGIDLAAYESLKDMSKKYILHDEEAGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRAYMGMADVFKRTFKHEGLRGFYKGLFPNLLKVVPSASITYLVYENMKKGLDLE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03472 479 FunFam Mitochondrial substrate carrier family protein 194 477 - -
Spst4g03472 479 Pfam Mitochondrial carrier protein 197 284 IPR018108 -
Spst4g03472 479 Pfam Mitochondrial carrier protein 294 384 IPR018108 -
Spst4g03472 479 Pfam Mitochondrial carrier protein 393 476 IPR018108 -
Spst4g03472 479 SUPERFAMILY EF-hand 30 200 IPR011992 -
Spst4g03472 479 ProSiteProfiles EF-hand calcium-binding domain profile. 131 166 IPR002048 GO:0005509
Spst4g03472 479 SMART efh_1 135 163 IPR002048 GO:0005509
Spst4g03472 479 SMART efh_1 99 127 IPR002048 GO:0005509
Spst4g03472 479 SMART efh_1 68 96 IPR002048 GO:0005509
Spst4g03472 479 PRINTS Mitochondrial carrier protein signature 203 216 IPR002067 GO:0055085
Spst4g03472 479 PRINTS Mitochondrial carrier protein signature 256 276 IPR002067 GO:0055085
Spst4g03472 479 PRINTS Mitochondrial carrier protein signature 309 327 IPR002067 GO:0055085
Spst4g03472 479 PRINTS Mitochondrial carrier protein signature 401 423 IPR002067 GO:0055085
Spst4g03472 479 PRINTS Mitochondrial carrier protein signature 216 230 IPR002067 GO:0055085
Spst4g03472 479 PRINTS Mitochondrial carrier protein signature 354 372 IPR002067 GO:0055085
Spst4g03472 479 ProSiteProfiles Solute carrier (Solcar) repeat profile. 294 381 IPR018108 -
Spst4g03472 479 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 111 186 - -
Spst4g03472 479 SUPERFAMILY Mitochondrial carrier 197 471 IPR023395 -
Spst4g03472 479 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 281 IPR018108 -
Spst4g03472 479 ProSiteProfiles Solute carrier (Solcar) repeat profile. 392 475 IPR018108 -
Spst4g03472 479 PANTHER SOLUTE CARRIER FAMILY 25 156 476 - -
Spst4g03472 479 Pfam EF-hand domain pair 99 155 IPR002048 GO:0005509
Spst4g03472 479 Gene3D Mitochondrial carrier domain 194 476 IPR023395 -
Spst4g03472 479 ProSitePatterns EF-hand calcium-binding domain. 144 156 IPR018247 -
Spst4g03472 479 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Spst4g03472 479 Gene3D - 12 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03472 Spst-Chr4 75444332 75447201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03472 14 479 EF-hand Containing Proteins AT5G51050 69.593 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03472 K14684 - gmx:100777729 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00236 1 3263065 3265729 Spst4g03472 4 75444332 75447201 PCT