Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00236 ATGAAGAAGGCGTCACCTGTGACGATGGATCACGTGCTTCTGGCTTCACAGGAGACGAAGGAGGCGCGTGAGGTGCGGATTCAGGGCCTCTTCGATTTCTTCGACGGGGAGAATCGCGGGTTCTTGGACTACAAGCACATCGAGGCGGGTCTCTCGGCGCTTCAGATTCCGCCGGAGTACAAGTACGCGAAGGATTTGTTGAACGCTTGCGATGCCAACAAGGATGGGAGAGTGGATTTCCAAGAGTTCAAGAGGTACATGGACGACAAGGAGTTGGAGCTTTATCGCATTTTTCAGGCCATCGATGTTGCGCACAATGGCTGCATTTTGCCGGAGGAGCTTTGGGAGGCACTTGTAAAAGCAGGCATTCGCTCTAGTCTTTCTACTGTAGGGATTAAGATTGATGACGATGAACTCGCCCGTTTTGTTGATCATGTTGATAAGGATAATAATGGTGTTATAACATTTGAAGAATGGAGGGATTTTCTGTTGCTTTACCCTCATGAGGCAACCATCGAGAACATTTACCATTATTTGGAGCGCATATGTATGGTTGATATTGGGGAACAGTCTGTTATTCCGGCAGGAATGAGTAAGCAAATTCATGCAAGTAGGTATTTGATTGCAGGAGGAGTAGCAGGTGCTACATCACGCACAGCAACTGCACCACTTGATCGTCTAAAGGTTGTATTGCAAGTCCAAACAACACGGGCTCATATAATGCCTGCGATCAAAGCTATATGGAAAGAGGGCGGTTTGTTAGGATTTTTTAGAGGGAATGGCTTAAATGTTTTTAAAGTTGCCCCTGAGAGTGCCATTAGATTTTATAGCTATGAGATGTTGAAGACCTTCATTGGGAGGGCCAGAGGGGAAGATACAAAGGGTGATATTGGAGCTATGGGCCGTCTACTAGCTGGTGGTATAGCTGGTGCTATAGCTCAAACTGCAATATATCCCATGGATCTCGTTAAAACGCGACTACAAACCTATTCTTGTGAAAGTAGAAGAATTCCTAGTCTTGGGACCCTTTCAAAAGATATTTGGCTTCAGGAAGGACCCCGGGCATTTTATAGGGGATTGATTCCTTCTCTTCTTGGGATTATCCCTTATGCTGGCATAGATCTTGCTGCTTATGAAACCTTGAAGGATATGTCCAAGCAGTATTTTGTTCACGATGGAGAACCTGGCCCTCTGGTGCAATTAGGATGTGGGACTGTATCTGGAGCTCTTGGAGCAACATGCGTTTACCCACTACAGGTGGTTAGAACAAGAATGCAGGCTCAACGCTCTTATAAGGGAATGGCTGATGTGTTCAGGAAAACCTTGGAAAATGAAGGCTTTAGGGGACTCTACAAAGGAATATTTCCAAACTTACTTAAGGTTGTACCGTCAGCAAGCATCACCTACATGGTTTATGAGCATATGAAAAAAAGTTTGCATTTGGAGTGA 1449 0.4534 MKKASPVTMDHVLLASQETKEAREVRIQGLFDFFDGENRGFLDYKHIEAGLSALQIPPEYKYAKDLLNACDANKDGRVDFQEFKRYMDDKELELYRIFQAIDVAHNGCILPEELWEALVKAGIRSSLSTVGIKIDDDELARFVDHVDKDNNGVITFEEWRDFLLLYPHEATIENIYHYLERICMVDIGEQSVIPAGMSKQIHASRYLIAGGVAGATSRTATAPLDRLKVVLQVQTTRAHIMPAIKAIWKEGGLLGFFRGNGLNVFKVAPESAIRFYSYEMLKTFIGRARGEDTKGDIGAMGRLLAGGIAGAIAQTAIYPMDLVKTRLQTYSCESRRIPSLGTLSKDIWLQEGPRAFYRGLIPSLLGIIPYAGIDLAAYETLKDMSKQYFVHDGEPGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRSYKGMADVFRKTLENEGFRGLYKGIFPNLLKVVPSASITYMVYEHMKKSLHLE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00236 482 Pfam EF hand 64 85 IPR002048 GO:0005509
Spst1g00236 482 PANTHER SOLUTE CARRIER FAMILY 25 159 480 - -
Spst1g00236 482 SMART efh_1 93 121 IPR002048 GO:0005509
Spst1g00236 482 SMART efh_1 138 166 IPR002048 GO:0005509
Spst1g00236 482 SMART efh_1 26 54 IPR002048 GO:0005509
Spst1g00236 482 SMART efh_1 62 90 IPR002048 GO:0005509
Spst1g00236 482 Gene3D - 8 180 - -
Spst1g00236 482 SUPERFAMILY Mitochondrial carrier 200 474 IPR023395 -
Spst1g00236 482 ProSitePatterns EF-hand calcium-binding domain. 147 159 IPR018247 -
Spst1g00236 482 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 105 189 - -
Spst1g00236 482 Pfam Mitochondrial carrier protein 296 387 IPR018108 -
Spst1g00236 482 Pfam Mitochondrial carrier protein 200 286 IPR018108 -
Spst1g00236 482 Pfam Mitochondrial carrier protein 396 479 IPR018108 -
Spst1g00236 482 ProSiteProfiles EF-hand calcium-binding domain profile. 134 169 IPR002048 GO:0005509
Spst1g00236 482 PRINTS Mitochondrial carrier protein signature 312 330 IPR002067 GO:0055085
Spst1g00236 482 PRINTS Mitochondrial carrier protein signature 357 375 IPR002067 GO:0055085
Spst1g00236 482 PRINTS Mitochondrial carrier protein signature 259 279 IPR002067 GO:0055085
Spst1g00236 482 PRINTS Mitochondrial carrier protein signature 219 233 IPR002067 GO:0055085
Spst1g00236 482 PRINTS Mitochondrial carrier protein signature 404 426 IPR002067 GO:0055085
Spst1g00236 482 PRINTS Mitochondrial carrier protein signature 206 219 IPR002067 GO:0055085
Spst1g00236 482 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Spst1g00236 482 ProSiteProfiles Solute carrier (Solcar) repeat profile. 201 284 IPR018108 -
Spst1g00236 482 SUPERFAMILY EF-hand 22 199 IPR011992 -
Spst1g00236 482 ProSiteProfiles Solute carrier (Solcar) repeat profile. 297 384 IPR018108 -
Spst1g00236 482 FunFam Mitochondrial substrate carrier family protein 197 480 - -
Spst1g00236 482 FunFam Mitochondrial substrate carrier family protein 1 92 - -
Spst1g00236 482 Gene3D Mitochondrial carrier domain 196 480 IPR023395 -
Spst1g00236 482 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Spst1g00236 482 ProSiteProfiles Solute carrier (Solcar) repeat profile. 395 478 IPR018108 -
Spst1g00236 482 Pfam EF-hand domain pair 93 161 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00236 Spst-Chr1 3263065 3265729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00236 1 482 EF-hand Containing Proteins AT5G51050 70.600 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00236 K14684 - gmx:100775805 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00236 1 3263065 3265729 Spst1g00236 1 3263065 3265729 ECH
Spst1g00236 1 3263065 3265729 Spst4g03472 4 75444332 75447201 PCT