Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03398 ATGGCAGCGGAGCGCGTTTATGAAGCATGGAAAGGAAGTAATAAATTCCTATTTGGAGGAAGGTTGATATTTGGACCTGATGCTAGGTCACTGATTGTCACCTTGTTGCTGATCATTGTTCCAGTTATCGTCTTTTGTGTATTTGTAGCAAGGCATCTTCGGCATGAATTTTCTTCATATAATGCAGGATATGCTATTTTGGTGATGGCAGTTCTCTTTAATATTTATGTGTTGATTCTTCTCTTTCTTACTTCCTCACGTGATCCGGGTGTTATTCCAAGGAATTTACATCCTCCAGAAGAAGAGTTCCGATATGACACTTCAGTTTCAGTTGATATTGGGGGACGCCAAACTCCAAGCCTTCAGTTCCCTCGATCAAAAGAAGTTATGGTCAATGGCCATCCGGTGAGGGTGAAGTATTGTGATACTTGTATGCTGTATCGTCCTCCTCGATGTTCGCATTGCTCCATTTGCAACAATTGTGTTGAACGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGTATTGGGCTGAGAAACTACCGTTACTTCTTTCTGTTTGTTTCTTCGGCAACTATTCTATGTATCTATGTGTTTTCCATCTCAGCTTTTTACATTAAGGTTCTGATGGATCAATATCACGGGACAGTTTGGAGGGCAATGAAAGAATCCCCTGCATCAGTTATATTAATGGCATACTGCTTCATCTCTTTGTGGTTTGTTGGTGGACTTACTGGCTTTCATTTGTATCTTATTGGGTCCAATCAGACTACCTATGAGAACTTCCGGTACAGAGCCGATAACAGGATCAATGTTTACAACCGGGGTTGTTTAAACAATTTCATGGAAGTATTTTGTACAAAGGTGAAGCCCTCAAGAAACAATTTTCGGGCTTTTGTTCAAGAGGAGGTACCGAGGCCACCCCCTCCTATCATTTCCCGGGAATCTGAACCCGATCAGGGTGGAGACCCTCGTTCTAAAGTTGAAGACGATCTAGACATCGGCGAAGACCTGTTAAAGATATCGCAGCGGCGGAATATCGAAGAAATCGACGAGGACATCCGGAGCAGAGGGAGCAATGGACCTCCCCATAACACATCTGAAGTTGATTCAGTTTTGGGTTCAGATCGCCGGGCCCCAACAATTCGAGCCGAAGCAAGGCACTCAAGTGAGGAAAGAAGTGAAAGCTGGGAAATTGCCTCTGAGGTCCTTGCCAATTCAAATGTTACTGAAAGTAGAGGCTATGCTGCATCAAAGGAGGTGCGCCAAAAACTTGGTGGCTCTTTCTGA 1290 0.4395 MAAERVYEAWKGSNKFLFGGRLIFGPDARSLIVTLLLIIVPVIVFCVFVARHLRHEFSSYNAGYAILVMAVLFNIYVLILLFLTSSRDPGVIPRNLHPPEEEFRYDTSVSVDIGGRQTPSLQFPRSKEVMVNGHPVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFLFVSSATILCIYVFSISAFYIKVLMDQYHGTVWRAMKESPASVILMAYCFISLWFVGGLTGFHLYLIGSNQTTYENFRYRADNRINVYNRGCLNNFMEVFCTKVKPSRNNFRAFVQEEVPRPPPPIISRESEPDQGGDPRSKVEDDLDIGEDLLKISQRRNIEEIDEDIRSRGSNGPPHNTSEVDSVLGSDRRAPTIRAEARHSSEERSESWEIASEVLANSNVTESRGYAASKEVRQKLGGSF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03398 429 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 37 305 - -
Spst4g03398 429 MobiDBLite consensus disorder prediction 300 333 - -
Spst4g03398 429 Pfam DHHC palmitoyltransferase 138 263 IPR001594 GO:0016409
Spst4g03398 429 MobiDBLite consensus disorder prediction 380 398 - -
Spst4g03398 429 MobiDBLite consensus disorder prediction 352 398 - -
Spst4g03398 429 ProSiteProfiles DHHC domain profile. 139 189 - -
Spst4g03398 429 MobiDBLite consensus disorder prediction 318 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03398 Spst-Chr4 74231343 74251529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03398 65 285 Lipid Metabolism Gene Families AT4G22750 27.273 1.07e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03398 K16675 - gmx:100818705 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03398 4 74231343 74251529 Spst4g03398 4 74231343 74251529 ECH
Spst4g03398 4 74231343 74251529 Spst10g00829 10 8732729 8737981 PCT