Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00842 ATGGATACCAAGGGGAGACTGGTCGCAGGGTCACATAACCGGAATGAGTTTGTTCTCATCAATGCTGATGAAACTGCAAGGGTGAACGCTGTCACAGAATTGAGCGGGCAAATTTGCCAGATCTGTGGGGATGAGATAGAGATCACTGTGGACGGTGAACCGTTTGTTGCATGTAATGAATGTGCGTTCCCCGTGTGTAGACCTTGCTATGAGTATGAAAGAAGAGAGGGGAACCAAGTTTGCCCTCAGTGCAAAACCAGATACAAGCGCCTAAAGGGTAGTCCTAGAGTTGAGGGTGATGAGGAAGAAGAGGACACTGATGATTTGGAAAATGAGTTTGACATTGGAAGCAATATCAGGCGTGGTCACGTTGAGGCCATGCTCTTTGCTCACCTCAACACTGGTCATGGTTCACAAATGAATGCTCCAGGGATCACCACACAATCAGAGTTTGATGCAGCTTCTTTGGCTGCTGATATTCCTCTCCTGACATATGATCACGAGGATGTTGGGATTTCTGCTGAGAAACATGCTCTAATTATTCCTCCATTCATGTCTCGTGGAAAACGGATTTATCCTATGCCTTTTTCTGATTCATCTGTGCCAGTTCAACCCAGACCTATGGATCCTAAAAAGGATTTAGCGGTTTATGGATATGGAAGTGTCGCATGGAAGGAACGAATGAAGGACTGGAAGAAAAAGCAGAATGAAAAAATTGAGGTAGTTAAGCATGAAGGGGGTAACGATGGTGGGAAAAATGGTGTGGAGCTTGATGACCCTGATTTGCCAAAAATGGATGAAGGCAGGCAACCACTGTGGAGGAAGTTGCCAATTAGTCCAAGCAAGATCAGTCCATATCGAATTATAATAGTACTCCGGATAGTTGTTCTTGGCCTATTTTTTCATTATAGAATCCTTCACCCGGTCAATGATGCATATGCATTGTGGCTGACATCAGTAGTATGTGAAATCTGGTTTGCCGTGTCATGGATTTTGGACCAATTTCCTAAGTGGTGCCCAATTGAGCGAGAAACATACCTGGATCGTTTGTCATTGAGGTACGAGAAAGAAGGAAAGCCATCTGAATTAGCTGATATAGACGTTTTTGTTAGTACAGTTGATCCTATGAAAGAACCTCCCCTTATAACTACAAATACAGTTCTATCCATTCTTGCTGTAGATTATCCAGTGGAGAAAGTTGCATGTTATGTCTCAGATGATGGTGCAGCTATGCTTACATTTGAAGCCCTTTCAGAGACTGCTGAATTTGCAAGAAAGTGGGTTCCATTTTGTAAGAAGTTCAGCATTGAACCTCGTGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTATCTGAAAGACAAAGTTGATGCAATATTCATCAGGGAGCGTCGTGCTATTAAGAGGGAGTATGAAGAGTTTAAAGTGCGTATCAATGCATTGGTTGCAATGGCACAGAAAGTTCCTGAGGATGGCTGGACAATGCAGGATGGGACTCCGTGGCCTGGAAATAGTGTCAGGGATCATCCTGGAATGATTCAAGTTTTCCTTGGTCAAAATGGTCTTCGTGATATTGAAGGGAATGAGTTACCTCGTCTTGTCTACGTGTCTCGTGAAAAAAGACCAGGATTTGAACACCACAAAAAAGCTGGTGCTATGAATGCCTTGGTGCGAGTCTCAGCAGTCATATCAAATGCTCCTTACCTGCTCAATGTCGATTGTGATCACTACATAAACAACAGCAAAGCACTTCGTGAAGCAATGTGTTTCATGATGGATGCTACATCAGGGAAAAATATATGCTATGTACAATTTCCTCAAAGGTTTGACGGGATTGATCGTCATGATAGATACTCAAATCGCAATGTTGTATTCTTTGATATAAACATGAAAGGTTTGGATGGCATCCAAGGACCAATATATGTGGGAACTGGGTGTGTTTTTAGAAGGCAGGCACTCTATGGATATGATGCCCCTGCCAAGAAGAAACCACCGAGGAAGACTTGTAACTGTTGGCCTAAATGGTGCTGCCTGTGCTGTGGATCTAGGAACAAAAATAGAAAAGTGAAGACAAGTCCAAGAAAAAAGATAAAAAACAAGGATGCAACAAAGCAAATACATGCACTAGAAAATATTGAAGAGGGAATTGAAGGAATTGACAGCGAGAAGTCGTGGTTAATGTCACGACTAAAATTTGAGAAAAAATTTGGACAATCACCCGTTTTCATAGCTTCAACGCTTATGGAAGATGGGGGTATTCCAAAAGGAGCAACTTCTGCATCACTCTTGAAAGAAGCCATTCATGTTATCAGTTGTGGTTATGAAGATAAGACAGAGTGGGGGAAAGAGGTTGGATGGATATATGGTTCTGTTACAGAAGATATATTAACAGGTTTCAAGATGCACTGTCACGGTTGGCGGTCTGTGTACTGCATGCCTAAAAGGCCTGCTTTTGAGGGCTCAGCTCCCATAAATCTTTCAGATCGTCTGCATCAAGTTCTCCGTTGGGCACTTGGATCTGTTGAGATCCTGTTGAGTAAGCATTGTCCAATATGGTATGGATATGGTTGTGGCTTGAAATGGCTGGAGCGCTTTTCTTACATAAACTCAGTAGTTTATCCTTTGACATCACTTCCCTTAATTGCATACTGCACCTTGCCGGCTGTCTGTCTTCTCACTGGAAAGTTCATAGTCCCTGAGATTAGCAACTACGCCAGTATCATTTTCATGGCACTCTTCATCTCCATAGCTGCAACAGGCATCCTTGAAATGCAGTGGGGAGGTGTTGGCATACATGACTGGTGGAGGAATGAGCAGTTCTGGGTCATTGGTGGTGCCTCCTCACACCTCTTTGCTCTCTTCCAGGGTTTGCTCAAGGTTCTGGCAGGAGTTAACACAAACTTCACAGTTACATCCAAAGCTGCAGACGATGGAGACTTTGCTGAACTCTACCTCTTCAAGTGGACATCATTGTTGATCCCTCCTTTGACCTTGCTCCTCATTAACATAATTGGAGTTATTGTAGGTGTTTCAGATGCAATAAACAATGGCTACGATTCATGGGGTCCTCTATTTGGCAGACTATTTTTTGCTCTTTGGGTCATTGTTCATCTTTACCCCTTCCTCAAGGGAGTCATGGGAAAACAGGAGGGTGTTCCCACCATCATTTTGGTCTGGTCTATTCTCCTGGCTTCAATCTTAACACTTCTATGGGTGAGGATCAACCCATTCTTGTCAAAAGATGACATTGTGTTGGAACTTTGTGGGTTGAATTGTGACTAG 3282 0.4317 MDTKGRLVAGSHNRNEFVLINADETARVNAVTELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQVCPQCKTRYKRLKGSPRVEGDEEEEDTDDLENEFDIGSNIRRGHVEAMLFAHLNTGHGSQMNAPGITTQSEFDAASLAADIPLLTYDHEDVGISAEKHALIIPPFMSRGKRIYPMPFSDSSVPVQPRPMDPKKDLAVYGYGSVAWKERMKDWKKKQNEKIEVVKHEGGNDGGKNGVELDDPDLPKMDEGRQPLWRKLPISPSKISPYRIIIVLRIVVLGLFFHYRILHPVNDAYALWLTSVVCEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELADIDVFVSTVDPMKEPPLITTNTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDAIFIRERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNSVRDHPGMIQVFLGQNGLRDIEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDATSGKNICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKPPRKTCNCWPKWCCLCCGSRNKNRKVKTSPRKKIKNKDATKQIHALENIEEGIEGIDSEKSWLMSRLKFEKKFGQSPVFIASTLMEDGGIPKGATSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFEGSAPINLSDRLHQVLRWALGSVEILLSKHCPIWYGYGCGLKWLERFSYINSVVYPLTSLPLIAYCTLPAVCLLTGKFIVPEISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGDFAELYLFKWTSLLIPPLTLLLINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWSILLASILTLLWVRINPFLSKDDIVLELCGLNCD 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00842 1093 SUPERFAMILY RING/U-box 27 107 - -
Spst10g00842 1093 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Spst10g00842 1093 CDD mRING-HC-C4C4_CesA 37 87 - -
Spst10g00842 1093 SUPERFAMILY Nucleotide-diphospho-sugar transferases 380 891 IPR029044 -
Spst10g00842 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Spst10g00842 1093 Pfam Cellulose synthase 366 1082 IPR005150 GO:0016020|GO:0016760|GO:0030244
Spst10g00842 1093 FunFam Cellulose synthase 21 112 - -
Spst10g00842 1093 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 660 IPR029044 -
Spst10g00842 1093 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 270 1057 - -
Spst10g00842 1093 FunFam Cellulose synthase 483 657 - -
Spst10g00842 1093 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00842 Spst-Chr10 8955183 8960581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00842 1 1092 Glycosyltransferase AT5G64740 78.650 0.0 1770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00842 K10999 - gmx:100806786 1975.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03385 4 74086048 74093710 Spst10g00842 10 8955183 8960581 PCT