Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03302 ATGTCTCAGGTCGCAGTCTCACGATCCATTCAAAGCACTCTTTTGTGCCCCTCTTCTAGATCTGCAAGTGACAGGGCCCAAAACCTGTTAAAGCCTCAATATTTTGCTTCGAAGGTGTTACCTTCACCAGGGAACAATAACAAAAGCTCCCAACTCGGCCTCAGAAGCTTTCAGATCAGTGCAGGGAAATCTGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCACAGATTGAGGAGCATTTGCGACATTTACGTGGGGTGCAGCCATTTGGTGAGAATTCGGGTGGGATGTGGTCGAAGCCCACGTTTAGGCGCAAGACCAAGATCGTATGTACCATTGGACCATCTACCAATACGAAGGAAATGATTTGGAAGCTGGCTGAGGCTGGGATGAACGTTGCTCGGTTGAATATGTCTCATGGGGACCATGCTTCTCATCAGAAAGTTATTGACTTGGTTAAGGAATATAATGCTCAAAACAAGGACAATGTGATTGCAATCATGCTTGACACAAAGGGTCCTGAAGTTAGGAGTGGGGATTTGCCACAACCTATCATATTAATGCCTGGGCAGGAATTCACTTTTACTATTCAAAGAGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTACGATGATTTTGTCAATGATGTGGAAGTGGGCGATATGCTTCTTGTTGATGGTGGTATGATGTCTATGGTGGTTAAGTCTAAGACACAGGATTCTGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTGAAGTCTAGGCGACATTTGAATGTTAGAGGAAAAAGTGCAACACTTCCTTCAATCACTGAGAAGGATTGGGATGATATCAAGTTTGGAGTTGATAACAAAGTTGACTTCTATGCTGTTTCCTTTGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGAGCAGTGGTGTTGATATACATGTTATTGTAAAAATTGAAAGCGCAGACTCAATCCCAAATTTGAACTCAATTATCACTGCATCTGATGGGGCTATGGTTGCCAGAGGAGATCTTGGTGCTGAGCTCCCCATTGAAGAGGTTCCACTTTTGCAGGAAGAGATAATCAACTTGTGTCGTAGCATGGGAAAGGCTGTTATTGTGGCAACAAATATGCTAGAAAGCATGATTGTTCATCCAACTCCTACCAGAGCAGAGGTATCAGATATAGCAATTGCTGTTCGAGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAAGTTCCCGTTAAAAGCTGTGAAAGTAATGCACACAGTAGCATTGCGGACAGAGGCCACTATACCAGGTGGTCTTATGCCACCTAACATTGGTCCAGTGTTCAAGAACCGCATGAGTGAGATGTTTGCATACCATGCAACAATGATGTCTAACACCCTTGGAACCTCAACTGTTGTCTTCACTAGAACTGGTTTCATGGCTATCTTACTGAGCCACTATCGTCCTTCTGGCACCATATTTGCTTTTACAGATGAGAAGAGGGTGCAGCAGAGGCTTGCTTTGTATCAAGGAGTCTGTCCCATATACATGGAATTCTGTGACGATTCTGAGGCAACCTTCAGAAGAGCCTTGGACCTTCTGCAGAAGCAAGGAATGGTGAAGGAAGGAGAAGAAGTAGCACTTGTACAAAGTGGAAGGCAACCCATATGGAGGTTCCAATCCACGCACAATATCCAGGTTAGGAAAGTGTAA 1734 0.4406 MSQVAVSRSIQSTLLCPSSRSASDRAQNLLKPQYFASKVLPSPGNNNKSSQLGLRSFQISAGKSAPSEVIPVSPEDDPQIEEHLRHLRGVQPFGENSGGMWSKPTFRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQNKDNVIAIMLDTKGPEVRSGDLPQPIILMPGQEFTFTIQRGVGTADCVSVNYDDFVNDVEVGDMLLVDGGMMSMVVKSKTQDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAEVVHELKNYLKSSGVDIHVIVKIESADSIPNLNSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPLKAVKVMHTVALRTEATIPGGLMPPNIGPVFKNRMSEMFAYHATMMSNTLGTSTVVFTRTGFMAILLSHYRPSGTIFAFTDEKRVQQRLALYQGVCPIYMEFCDDSEATFRRALDLLQKQGMVKEGEEVALVQSGRQPIWRFQSTHNIQVRKV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03302 577 SUPERFAMILY PK beta-barrel domain-like 177 268 IPR011037 -
Spst4g03302 577 Gene3D - 110 435 IPR040442 -
Spst4g03302 577 Gene3D - 451 577 IPR036918 -
Spst4g03302 577 PANTHER PYRUVATE KINASE 95 555 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Spst4g03302 577 FunFam Pyruvate kinase 439 558 - -
Spst4g03302 577 ProSitePatterns Pyruvate kinase active site signature. 318 330 IPR018209 GO:0004743|GO:0006096
Spst4g03302 577 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 101 442 IPR015813 GO:0003824
Spst4g03302 577 Gene3D - 178 271 IPR015806 GO:0004743|GO:0006096
Spst4g03302 577 SUPERFAMILY PK C-terminal domain-like 426 577 IPR036918 -
Spst4g03302 577 FunFam Pyruvate kinase 273 438 - -
Spst4g03302 577 PRINTS Pyruvate kinase family signature 416 432 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Spst4g03302 577 PRINTS Pyruvate kinase family signature 347 371 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Spst4g03302 577 PRINTS Pyruvate kinase family signature 320 346 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Spst4g03302 577 PRINTS Pyruvate kinase family signature 166 182 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Spst4g03302 577 PRINTS Pyruvate kinase family signature 290 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Spst4g03302 577 PRINTS Pyruvate kinase family signature 397 415 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Spst4g03302 577 PRINTS Pyruvate kinase family signature 372 396 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Spst4g03302 577 Pfam Pyruvate kinase, barrel domain 108 442 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Spst4g03302 577 NCBIfam pyruvate kinase 108 576 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Spst4g03302 577 Pfam Pyruvate kinase, alpha/beta domain 465 557 IPR015795 -
Spst4g03302 577 FunFam Pyruvate kinase 178 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03302 Spst-Chr4 72875552 72882814 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03302 K00873 - gmx:100803036 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03302 4 72875552 72882814 Spst4g03302 4 72875552 72882814 ECH
Spst4g03302 4 72875552 72882814 Spst10g00899 10 9809001 9816050 PCT