Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03143 ATGGGGAATTCATTTGGGTGCTCGGCGTCCGGCGAAAGGTTGGTATCGGCCGCGAGGGACGGCGATTTGGTTGAGGCGAAGATGCTTCTGGAATGCAACCCTTGTCTTGCAAAGTACTCAACTTTTGGGGGTCTCAATTCCCCTCTTCACTTTGCAGCTTCTAAAGGCCATAATGAGATTGTGGCATTGCTGCTTGAAAATGGAGCTGATATGAATTCAAGAAATTATTGTGGGCAGACGGCCTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAAACTCTTATGCTCTACAGATGTAATGTTTTGAAAGCAGATTATCTCAGTGGGAGGACAGCTCTACACTTTGCAGCCATCAATGGGCATGCGAGATGCATCAGACTTGTTGTGGCAGATTTTGTTCCAAGTGCTCCTTTTGAAACTTTACAGATTCATGCAGATGCGGAAAGTGATAGGTCAAATGTGAAAAACAAAAATGAACAAAGTCTGCTGTCCAAGTTTGTAAACAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGTACTTTGATTGCGTACAACTGCTACTTGATCTTGATGCAAATGTGTCAGCTGCAACATTTCATTATGGAACATCAATGGATTTAATTGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAACTTAAAATGCTATCCTCCTTGCAAGAGTGTACATTTTTGCCCCTCCAGATGGCTTCCACTTGATGTTGCTAGGATGTGGGGACGTCATTGGCTTGAACCATTGCTGGCACCCACTTCTGAAGCCACAATATCGACATTCCCTTCTTCAAATTATTTGTCCTTGCCTCTCATGAGTGTACTCAACATTGCCAGAGACTGTGGATTGCAATCAACTACAACCTCTTCTAATGAAGTTGATGTTTGTGCTGTCTGCTTGGAGAGGTCATGTTCAGTGGCTGCTGAAGGATGTGGACATGAGCTTTGTGTAAAATGTGCCCTCTATCTTTGCTCAACAAGCAATGTTACTTCTGAAACGGGTGGACCTCCTGGTTCTATCCCTTGCCCCCTTTGCAGACACGGAATCGTCTCTTTTGTCAAGTTACCAGGTTCCCATGCAAAAGAAAACAAAATGCATGTGTCTCTCGGCCTGTGTACCCCATGCATACTACATACACGTGACCTAGCTCGCTCGTCTCTTTCTCATACCCCTGAGATTCGAAGGAACCGTGTAGCTTCAGTTCCTTCAGAGATGCTTTGTCCTGTCACTTGTACTCCATTTCCATCTGTAGCAATTCCTCTTTGTACTTGCAATGATGGTCCCTGTCCATCATTTGAACCCCGGGAAGCAGAAACACGAGATGAATCGCCTCGCCACTCTCAAGCATCGACGATGATGGATCAGGATAAAATGGAAGGTCCAAGGCTGGACAAAACAACATGCTCAGGTATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1524 0.4501 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADMNSRNYCGQTALMQACRYGHWEVVQTLMLYRCNVLKADYLSGRTALHFAAINGHARCIRLVVADFVPSAPFETLQIHADAESDRSNVKNKNEQSLLSKFVNKTADAGITALHMAALNGYFDCVQLLLDLDANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCYPPCKSVHFCPSRWLPLDVARMWGRHWLEPLLAPTSEATISTFPSSNYLSLPLMSVLNIARDCGLQSTTTSSNEVDVCAVCLERSCSVAAEGCGHELCVKCALYLCSTSNVTSETGGPPGSIPCPLCRHGIVSFVKLPGSHAKENKMHVSLGLCTPCILHTRDLARSSLSHTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPSFEPREAETRDESPRHSQASTMMDQDKMEGPRLDKTTCSGMFWGRRSCSREHQCNSEINA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03143 507 ProSiteProfiles Ankyrin repeat region circular profile. 176 205 - -
Spst4g03143 507 SUPERFAMILY Ankyrin repeat 14 262 IPR036770 -
Spst4g03143 507 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Spst4g03143 507 SUPERFAMILY RING/U-box 312 369 - -
Spst4g03143 507 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Spst4g03143 507 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 12 235 - -
Spst4g03143 507 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Spst4g03143 507 Pfam Ankyrin repeats (3 copies) 164 235 IPR002110 GO:0005515
Spst4g03143 507 ProSiteProfiles Zinc finger RING-type profile. 313 363 IPR001841 -
Spst4g03143 507 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Spst4g03143 507 ProSitePatterns Zinc finger RING-type signature. 328 337 IPR017907 -
Spst4g03143 507 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Spst4g03143 507 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Spst4g03143 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 386 IPR013083 -
Spst4g03143 507 Gene3D - 7 140 IPR036770 -
Spst4g03143 507 SMART ring_2 313 362 IPR001841 -
Spst4g03143 507 Gene3D - 141 236 IPR036770 -
Spst4g03143 507 SMART ANK_2a 176 205 IPR002110 GO:0005515
Spst4g03143 507 SMART ANK_2a 77 106 IPR002110 GO:0005515
Spst4g03143 507 SMART ANK_2a 44 73 IPR002110 GO:0005515
Spst4g03143 507 SMART ANK_2a 111 142 IPR002110 GO:0005515
Spst4g03143 507 MobiDBLite consensus disorder prediction 451 478 - -
Spst4g03143 507 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03143 Spst-Chr4 70883944 70890271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03143 14 274 Miscellaneous Gene Families AT2G31820 27.778 8.78e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03143 K19044 - gmx:100784143 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03143 4 70883944 70890271 Spst4g03143 4 70883944 70890271 ECH
Spst4g03143 4 70883944 70890271 Spst10g01004 10 10677462 10681655 PCT