Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01004 ATGGGGAATTCATTCGGGTGTTCGGCCTCCGGCGAGAGGCTGGTGTCGGCGGCGAGGGACGGGGACTTAGTGGAGGCGAAGATGCTTCTGAACTGCAACCCCTGTCTCGCCAAGTATTCAACCTTCGGTGGCCTCAATTCTCCACTCCATTTTGCAGCCGCCAAAGGCCATAACGAGATTGTGGCATTGTTGCTGGAGAATGGAGCTGATGTTAATTCCAGAAATTATTGTGGCCAGACGGCCTTGATGCAAGCTTGTAGATATGGGCACTGGGAAGTTGTACAGACACTTCTACTCTTCAGATGCAATGTTATGAGGGCTGATTACCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTACATGGGCATGTAAGATGTATCAGACTTGTTGTGGCTGACTTTGTACCAAGTGCACCATATCAAGCTATACATGCTTGCACAAATGTTGACAAGGGTGGTGGATCAAATGTGAAAGGCAAACATGAGCATAGTGCCCTGTCGAAGTTTGTAAATAAAACTGCTGATGGTGGTGTCACTGCCCTTCACATGGCCGCGTTAAATGGGTACTTTGACTGTGTACAACTTCTGCTTGATCTTAACGCAAATGTGTCTGCTGTGACATTTCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGGAATTTAAAATGCTGTCAGATCCTTGTTGCTCGAGGTGCAAGTCGGATGGCTTTAAATTGCAATGGGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTACTGGCACCCAGTTCTGATACCACAGTACCTACATTCTCTCATTCAAATTATTTGTCCTTGCCCCTTATGAGTGTGCTCAACATAGCTAGAGAGTATGGATTACAATCATCTACCACCTCCTCTGATGAGATTGAATTTTGTGCTGTATGTCTGGAGAGACCATGTTCAGTGGCTGCAGAAGGATGTGGGCATGAACTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAACAATGTTTCTTCTGAAATGCTTGGCCCTCCGGGCTCTATCCCTTGCCCTCTCTGTAGACATGGAGTTGTCTCTTTTGTCAAGTTACCTGGTTCCCAAGCAAAAGAAAATAAGTTACATGTGTCTCTGGGCCTGTGTACCCCTTGCATGCTACATCCACGTGACCTAGATCAGCCATCCCTCTCTCATACACCTGAGATTGGAAGAAATCGTGTAGCTTCTGTTCCTGCAGAAATACTCTGCCCCGTCACTTGTAGTCCTTTCCCATCTATGGCGATTCCCCTATGTACCTGCAATGATGGTCCATGTCCATCATTTGAACCCAGAGAAGTAGAAACACGAGATGAATCACCTCATCACTCTCAAGCATCAACAATGGATCAGGATAAAATTGAAGGGCCAAGACTGGATAAAACAACCTGCTCTAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAGATAAATGCTTGA 1539 0.462 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAVHGHVRCIRLVVADFVPSAPYQAIHACTNVDKGGGSNVKGKHEHSALSKFVNKTADGGVTALHMAALNGYFDCVQLLLDLNANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILVARGASRMALNCNGWLPLDIARMWGRHWLEQLLAPSSDTTVPTFSHSNYLSLPLMSVLNIAREYGLQSSTTSSDEIEFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMLGPPGSIPCPLCRHGVVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDLDQPSLSHTPEIGRNRVASVPAEILCPVTCSPFPSMAIPLCTCNDGPCPSFEPREVETRDESPHHSQASTMDQDKIEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01004 512 Gene3D - 147 295 IPR036770 -
Spst10g01004 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Spst10g01004 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Spst10g01004 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Spst10g01004 512 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Spst10g01004 512 Pfam Ankyrin repeats (many copies) 220 261 IPR002110 GO:0005515
Spst10g01004 512 Pfam Ankyrin repeats (many copies) 171 217 IPR002110 GO:0005515
Spst10g01004 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Spst10g01004 512 SUPERFAMILY RING/U-box 313 375 - -
Spst10g01004 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 391 IPR013083 -
Spst10g01004 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Spst10g01004 512 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Spst10g01004 512 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Spst10g01004 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Spst10g01004 512 MobiDBLite consensus disorder prediction 457 483 - -
Spst10g01004 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Spst10g01004 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Spst10g01004 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Spst10g01004 512 SMART ANK_2a 220 249 IPR002110 GO:0005515
Spst10g01004 512 SMART ANK_2a 111 141 IPR002110 GO:0005515
Spst10g01004 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Spst10g01004 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Spst10g01004 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Spst10g01004 512 Gene3D - 6 146 IPR036770 -
Spst10g01004 512 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Spst10g01004 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Spst10g01004 512 PANTHER ANKYRIN DOMAIN-CONTAINING 111 274 - -
Spst10g01004 512 SUPERFAMILY Ankyrin repeat 14 274 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01004 Spst-Chr10 10677462 10681655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01004 14 280 Miscellaneous Gene Families AT2G31820 27.407 2.16e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01004 K19044 - gmx:100785638 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01004 10 10677462 10681655 Spst10g01004 10 10677462 10681655 ECH
Spst4g03143 4 70883944 70890271 Spst10g01004 10 10677462 10681655 PCT