Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03098 ATGGAGATCTTTGTTGAGTGTGTTGGTGTGAGTGTTTTTGTTCAGCTGGTTGGAACTGTTATCTTCTGTGAATTAGTTGTAGTTTCCCTGCCAGTCCTTGGAATGGGGGGAAATTGCAGATGGTTACGGTATATTTCTTTTGTCATGTATGCATGGGATCTGTGTGATTTAGTACACGACATTATTGGGAGCAGAAATGGGTACTTGGAAACTAATTCCAATCATCTCAGAAAAGAAAACTGCAAGGAAAAAGGTTCACTGGTTGTTTGCTTTGGGGAAATGTTAATAGACTTTGTTCCAACGGTTGGAGGAGTGTCACTTGCTGAAGCACCTGCTTTCAAGAAAGCTCCGGGTGGAGCTCCTGCCAATGTGGCTGTTGGCATCTCTAGACTGGGAGGTTCATCTGCTTTTATTGGCAAGGTTGGAGCAGATGAATTTGGGTACATGCTGGCTGACATTTTAAAGCAAAACAATGTTGAGACTTCTGGCATGCGGTTTGACTCTAATGCAAGAACTGCGTTAGCTTTTGTTACACTTAGAGCGGATGGTGAACGTGAATTCTTGTTTTTCCGCAATCCAAGTGCTGATATGCTTCTTCAAGAATCAGAACTTGATAAAAATCTCCTAAAGCAGGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAGTCAGCTCACCTTGCTGCTATGAGAATGGCCAAAAACTCTGGTTGCATTCTCTCTTATGATCCAAATTTGAGATTGGCTCTGTGGCCTTCAGCAGATGCTGCTCGGAAAGGCATAATGGATATATGGGATCAAGCTGATGTCATAAAGATAAGCGAGGATGAAATTACATTTTTGACTGGAGGTGATGATCCTTATGACGATAATGTTGTTTTGAAGAAGCTTTTTCATCAAAATCTCAAGCTTTTAATTGTCACTGAGGGCTCACAGGGTTGCAGATATTACACCAAAGCATTTAAGGGAAGGATTGCAGGTGTTAAAGTTACACCTGTAGACACAACTGGTGCTGGCGATGCATTTGTTAGTGGGATTTTGTACAATATAGCTTCTGATCAAACTATTTTTCAGGATGAGAAAGATCTTCGAAAGGCTTTATATTTTGCCAATATATGTGGTGCCCTCACTGTGACCAAGAGAGGTGCAATTCCTGCACTACCTACAAAGGAAGCTATTTTGACATTCTTACTAGAAGCAGCTGTAATACAACAGAATTGA 1236 0.4126 MEIFVECVGVSVFVQLVGTVIFCELVVVSLPVLGMGGNCRWLRYISFVMYAWDLCDLVHDIIGSRNGYLETNSNHLRKENCKEKGSLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGADEFGYMLADILKQNNVETSGMRFDSNARTALAFVTLRADGEREFLFFRNPSADMLLQESELDKNLLKQARIFHYGSISLIDEPCKSAHLAAMRMAKNSGCILSYDPNLRLALWPSADAARKGIMDIWDQADVIKISEDEITFLTGGDDPYDDNVVLKKLFHQNLKLLIVTEGSQGCRYYTKAFKGRIAGVKVTPVDTTGAGDAFVSGILYNIASDQTIFQDEKDLRKALYFANICGALTVTKRGAIPALPTKEAILTFLLEAAVIQQN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03098 411 Pfam pfkB family carbohydrate kinase 87 394 IPR011611 -
Spst4g03098 411 PANTHER HEXOKINASE FAMILY MEMBER 87 401 - -
Spst4g03098 411 SUPERFAMILY Ribokinase-like 88 401 IPR029056 -
Spst4g03098 411 FunFam Probable fructokinase-2 84 406 - -
Spst4g03098 411 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 118 142 IPR002173 GO:0016301
Spst4g03098 411 PRINTS Ribokinase signature 268 283 IPR002139 GO:0016301
Spst4g03098 411 PRINTS Ribokinase signature 113 132 IPR002139 GO:0016301
Spst4g03098 411 PRINTS Ribokinase signature 310 321 IPR002139 GO:0016301
Spst4g03098 411 CDD bac_FRK 87 389 - -
Spst4g03098 411 Gene3D - 85 410 IPR029056 -
Spst4g03098 411 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 339 352 IPR002173 GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03098 Spst-Chr4 70361018 70364234 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03098 K00847 - gmx:100778752 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03098 4 70361018 70364234 Spst10g01037 10 11053208 11056396 ECH
Spst4g03098 4 70361018 70364234 Spst4g03098 4 70361018 70364234 ECH
Spst4g03098 4 70361018 70364234 Spst10g01037 10 11053208 11056396 PCT