Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03039 ATGCATCGTTTTGACTATACCTCATTAATGGTTTATGTTTCTGTTGAAGATTCGGAAGCTTCAGAAGTATTAGATGATGACGATAATGTGGATCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGCAAGTATGAATTCATTGATGAGGCTGGTTATGTCGGAGAAGATGTCGAATCAATATTGTACAAACTACTTGCGGCAGCAGATTTCAATGTTACAGCAGCACAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGGCTGAGAACTTAAATATCAGTCGGGATGTGTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCCAGGAAGCATCCAAGGGGGGATAACATTCAGATGGACACAAAAAATATTCTTTTTATATGTGGGGGAGCATTTATTGATCTTGAAAAAACCATTTCTGACAGACGTCAAGATTCTTCAATTGGTTTTGGAGCACCAGTTCGTGCTAGTATGAGACATAGTGGGATAACAGATGCTGTAGTAACATCATCTTTACTTGAGTCATTACCAACGGTGGTGTGTGCTTTCTCCAATCCTCCAACACCAGATAAAGACACAGTAGTGGAAAGTTCTGATCTTATTGCATATGGCCTCATACCAGAGTTTATTGGACGATTCCCCATCTTAGTCACCTTGTCAGCTTTAACTGAAGACCAACTTATGATGGTCCTCACAGAACCAAAAAATGCCCTTGGCAAGCAGTACAAGAAATTGTTTAGCATGAATAATGTTAAATTACACTTCACAGAGAAAGCTCTAAGACTGATAGCAAAGAAAGCAATGGCCAAAAATACCGGTGCTAGAGGTTTAAGAGCCCTACTGGAAAGCATTTTAACCGAAGCAATGTTTGAGATTCCTGATATTAAGACCGGAAGTGATCGAATTGAAGCAGTTGTTGTTGATGAAGAGTCAGTAGGATCACTAACCTCCCTTGGATGTGGAGGGAAAATTCTTCGCGGAGATGGTGCTTTGGAGCAGTACCTAGCTAAGATGAAAAATTCAGCGGTTAATATTGACGTAGGGGAATCAGATTTAAATGAGGGAGATTTGGAACTTTCATCAAGAGCCATGAGCTTGTAA 1167 0.3976 MHRFDYTSLMVYVSVEDSEASEVLDDDDNVDLEKSNVLLMGPTGSGKYEFIDEAGYVGEDVESILYKLLAAADFNVTAAQQGIIYIDEVDKITKKAENLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISDRRQDSSIGFGAPVRASMRHSGITDAVVTSSLLESLPTVVCAFSNPPTPDKDTVVESSDLIAYGLIPEFIGRFPILVTLSALTEDQLMMVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRLIAKKAMAKNTGARGLRALLESILTEAMFEIPDIKTGSDRIEAVVVDEESVGSLTSLGCGGKILRGDGALEQYLAKMKNSAVNIDVGESDLNEGDLELSSRAMSL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03039 388 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 243 345 - -
Spst4g03039 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 330 IPR027417 -
Spst4g03039 388 Gene3D - 243 341 - -
Spst4g03039 388 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 20 362 - -
Spst4g03039 388 Pfam C-terminal, D2-small domain, of ClpB protein 244 313 IPR019489 -
Spst4g03039 388 Pfam AAA domain (Cdc48 subfamily) 58 237 IPR003959 GO:0005524|GO:0016887
Spst4g03039 388 Gene3D - 5 242 IPR027417 -
Spst4g03039 388 SMART ClpB_D2_small_2 244 334 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03039 Spst-Chr4 69780678 69786673 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03039 K03544 - gmx:100805340 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03039 4 69780678 69786673 Spst4g03039 4 69780678 69786673 ECH
Spst4g03039 4 69780678 69786673 Spst10g00301 10 3031028 3042884 PCT