Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00301 ATGTCTCGAATCTTCTCTGCGTGGAACAAGAACAAGCTCCACTTCAACTTCTTACCTACTCTGTTCTCTTCGTCGCACACCACCAATTCTGGGCTTTTCCGGCCCACGATTCCGAGACTCTACAGTAGCAACAATGGGGAGCCACCACAGGATTGGCCTCACGACGCTGCCGTGCCTTCGAAAACTCCTTTCACTGTTAATTTTGTTCGGGCCTCCGCTGGGCCCCGCCAAGAGAACATTGCGTGGGTCGGAGGCTCCAATTTGGGCAGGGATTTTCCGACTCCCAAGGAAATCTGCAAGGGTCTCGATAAATTTGTTATTGGGCAACACAGGGCCAAGAAGGTGCTCTCTGTAGCGGTTTATAATCACTACAAGAGAATATTCAACGGGTCAGGGGAAGACGAGGGAATCTCCGATGGATTGCATGATGAGGATAATGTGGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACTGGTTCTGGGAAGACATTACTTGCGAAAACCCTGGCTCGTTTTGTGAATGTTCCCTTTGTCATTGCTGATGCAACTACACTAACGCAGGCAATTTTGGCGGTACTGATCCGAAAGGGGAAATTTTCTAATTTGCAGGCTGGTTATGTTGGGGAAGACGTTGAATCAATATTGTACAAACTTCTAGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTGAATATTAGCCGAGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGATTGACACAAAGAATATTCTCTTTATATGTGGTGGAGCATTTGTTGATCTTGAAAAAACCATTTCCGAGAGACGACAAGATTCTTCAATTGGTTTTGGAGCACCAATCCGTGCCAATATGAGAACTGGTGGAGTTACAGATGCCGCAGTTACATCATCTTTACTTGAGTCGGTGGAAAGTACTGATCTTATTACATATGGTCTCATCCCAGAGTTTATAGGACGATTTCCAATCTTAATTAGCTTGTCGGCTCTAACTGAAGACCAACTTATTCAGGTCCTCACAGAACCAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTAACATGAATAATGTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCCTACTGGAAATCATTTTAACGGAGGCCATGTTTGAGATTCCAGATGTTAAAGCAGGAAATGAACTGATTGATGCGGTTGTTGTTGATGAGGAGTCAGTAGGATCAGTAAATGCCCCTGGGTGCGGAGGAAAAATTCTCTCTGGCGATGGTGCTTTAGATCTGTACCTAGCTAATATGGAGGGTTCAGTGGTTAACCATAACGTAGCTGAACCATACTTACAAGAGGGGGAATCAGAGATTTCATCAAGAGCTATGAGCATGCTGGAAGTGTTTAATATGTGGGAGGACGAGGTAAGAAAAGAGATGAAGGTTGGGTGGTATAGTTGA 1629 0.442 MSRIFSAWNKNKLHFNFLPTLFSSSHTTNSGLFRPTIPRLYSSNNGEPPQDWPHDAAVPSKTPFTVNFVRASAGPRQENIAWVGGSNLGRDFPTPKEICKGLDKFVIGQHRAKKVLSVAVYNHYKRIFNGSGEDEGISDGLHDEDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAILAVLIRKGKFSNLQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISERRQDSSIGFGAPIRANMRTGGVTDAAVTSSLLESVESTDLITYGLIPEFIGRFPILISLSALTEDQLIQVLTEPKNALAKQYKKLFNMNNVKLHFTEKALRLIAKKAMAKNTGARGLRALLEIILTEAMFEIPDVKAGNELIDAVVVDEESVGSVNAPGCGGKILSGDGALDLYLANMEGSVVNHNVAEPYLQEGESEISSRAMSMLEVFNMWEDEVRKEMKVGWYS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00301 542 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 86 375 - -
Spst10g00301 542 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 376 479 - -
Spst10g00301 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 463 IPR027417 -
Spst10g00301 542 SMART ClpB_D2_small_2 377 470 IPR019489 -
Spst10g00301 542 Gene3D - 87 375 IPR027417 -
Spst10g00301 542 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 67 493 - -
Spst10g00301 542 Pfam AAA domain (Cdc48 subfamily) 150 370 IPR003959 GO:0005524|GO:0016887
Spst10g00301 542 SMART AAA_5 150 324 IPR003593 GO:0016887
Spst10g00301 542 CDD RecA-like_ClpX 93 374 - -
Spst10g00301 542 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 89 467 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Spst10g00301 542 Gene3D - 376 476 - -
Spst10g00301 542 Pfam C-terminal, D2-small domain, of ClpB protein 377 446 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00301 Spst-Chr10 3031028 3042884 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00301 K03544 - gmx:100818418 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03039 4 69780678 69786673 Spst10g00301 10 3031028 3042884 PCT