LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst4g02396	ATGTTGCGGAGGTTTCTCTCTACTCACCTCAAAACCCTAGCCGCCGCTTCCTCCTCTTCTTTCACTCCCCGATCTGCTTCCGCCGCCGCCAGATTCGCCGCTCTTTCTCGCTCCTCCCGCTACTTCTCAACTCAATCCGAGGATGCGACTGCGATCAAAAAGAAGGTTGAGGATGTAATGCCTATCGCTACTGGACACGAGCGCGAGGAACTTCAAGCTGAGCTCGAGGGGAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGGAAGCTCCTGCCATTGTAAAATCTTACTATGATAAAAGGATAGTTGGATGTCCAGGAGGTGAAGGCGAGGATGAGCACGATGTTGTTTGGTTTTGGCTGGAGAAAGGCAAACCTCATGAATGTCCTGTGTGCGCACAGTATTTTGTTCTTGAAGTGGTAGGACCTGGTGGACCACCCGATGGACATGGCGATGATGATCACCATTGA	486	0.5082	MLRRFLSTHLKTLAAASSSSFTPRSASAAARFAALSRSSRYFSTQSEDATAIKKKVEDVMPIATGHEREELQAELEGRNILEIDHPEGPFGTKEAPAIVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVLEVVGPGGPPDGHGDDDHH	161

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst4g02396	161	PANTHER	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	1	160	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Spst4g02396	161	Pfam	Cytochrome c oxidase subunit Vb	62	149	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Spst4g02396	161	SUPERFAMILY	Rubredoxin-like	52	149	-	-
	Spst4g02396	161	Gene3D	Cytochrome c oxidase, subunit Vb	52	146	IPR036972	GO:0005740\|GO:0005751\|GO:0006123
	Spst4g02396	161	ProSiteProfiles	Cytochrome c oxidase subunit Vb, zinc binding domain profile.	51	150	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Spst4g02396	161	CDD	Cyt_c_Oxidase_Vb	51	146	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Spst4g02396	161	FunFam	Cytochrome c oxidase subunit Vb	52	146	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst4g02396	Spst-Chr4	64465928	64470510	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst4g02396	K02265		-	gmx:100780886	256.144

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst4g02396	4	64465928	64470510	Spst5g00124	5	1157087	1159561	ECH
	Spst4g02396	4	64465928	64470510	Spst4g02396	4	64465928	64470510	ECH
	Spst5g00124	5	1157087	1159561	Spst4g02396	4	64465928	64470510	PCT