Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02250 ATGGCAAATAGTGAGGCTTGTTGTTCAACTCAAATTATTGATGGAGATGGTACATTCAATATTTCTGGGGTTGAAAACTTTATGAAGGAGGTGAAGTTGGCTGAATGTGGGCTTTCGTACGCTGGTGCTGACCTGATGGATCTGCTTGTTTTCAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAATTGTACCGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACTGATGGAAGAGAACGCGGAGAGGATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTATCAGATATAGTGTTAATAAATATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGAAAACTGTCTTTCAGGTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGGGATAAAACAAGGACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGATTCTGTTCCTAAACCACAGGCCCACAAAGAAACCCCATTAAGTGAATTTTTCAACGTTGAAGTTGTTGCTCTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAAAGAACAGGTTGCCAACTTGCGGCAACGATTCCAGCAGTCTATTGCTCCTGGTGGGCTTGCAGGGGATCGGCGTGGAGCAGTTCCTGCTTCTGGCTTTTCTTTTAGTTCTCAGCATATATGGAAAGTTATTAAGGAGAACAAAGATCTCGACCTTCCTGCACATAAGGTTATGGTTGCTACTGTTCGCTGTGAAGAAATCTCCAATGAGAAATATGCCTCTTTTGTTGCAAATGAGGATTGGTGTCAATTGGAAGAGGCTGTGCAATCTGGCCCAGTACCTGGATTTGGGAAAAAGCTCAGCTCACTCCTTGCATTCCAATCTGCGTTAGGACATATAAGATCTGGAACATTGGATAAATTCAAGGAGTCATTTGACAAGGCTTTGAATGGAGGGGAAGGGTTTTCTGTGGCTGCTAATAATTGCAAGGGGTCTTGTATAGTTCAATTCGATGAAGCATGTGCAGATGTTGTTGTTGAACAAACAAATTGGGATACATCTAAAGTGCGAGAAAAACTGCTGCGGGATATTGATGCACATATTGCAAATGTGCGAGCAACCAAAATTTCTGAACTTACATCATCATATGAGGAAAAACTTAAACAAGCGTTGTCTGGACCTGTTGAAGCACTTTTGGACGGAGCTAATAGTGATACTTGGTCATCGATAAGGAACCTTCTTAAGCGTGAGACTTTATCCGCCATTTCAGGTTTCTCTGCTGCACTTATTGGGTTTGATATGGATGATGAAACAAGACAGAAAATGCTTTCAAGTTTAGAGGATTATGCAAGGGGTCTGGTAGAAGGAAAGGCTAGGGAAGAAGCGGGAAGAGTTCTAATGCGCATGAAGGAGAGGTTTACAATGTTGTTTAGTCATGATTCTGATTCAATGCCTCGTGTTTGGACGGGCAAAGAAGATATACGAGCCATCACCAAGACTGCTCGCTCTTCTTCTTTGAAGTTGCTATCTGTCATGGCTGCAATCCGTTTGGATGATGCTGACTCTGACAATATTGAGAAAGTGTTAGCAGTTGCTTTGGTGGAACCATCACCAAGTAGTAATGGTACAAGGAGCATGACAGTGGTTGATCCACTAGCTTCTAGCAGCTGGGAACAGGTTTCATCCTCTAAAACATTGATAACACCTGTCCAGTGCAAGTCTTTGTGGAGGCAATTCAAAACAGAGACAGAGTACAGTGTATCTCAAGCCATTTCTGCACAGGAAGCAAACAAGCGCAACAACAACTGGTTACCTCCCCCTTGGGCAATTGCTGCCTTGGTTATTCTGGGATTTAATGAATTTATGACACTTTTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGTTATCTTCTTATTAAAGCCCTATGGGTGCAGCTTGACATTTCGGGTGAATTTCGCAATGGAGCTCTTCCGGGACTCATATCCTTGTCTAGCAAGTTTATTCCAACCATCATGAATCTGATGAAAAAGCTAGCAGAGGAGGGACAGAATCATGCAGCTAACAATCCTCAGAGAACCCCATCAAAAAACAGTTACAATGAGAGTCATGCTGTGTCGTCAAGTTCATCATCTAACCTGACTGCATTGGACAACGGAGCCGAGTATGCCAGTTCAGTAAAAGAAGAGTAG 2253 0.4234 MANSEACCSTQIIDGDGTFNISGVENFMKEVKLAECGLSYAGADLMDLLVFRSQTTKGIWMANCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSYEEKEEQFKEQVANLRQRFQQSIAPGGLAGDRRGAVPASGFSFSSQHIWKVIKENKDLDLPAHKVMVATVRCEEISNEKYASFVANEDWCQLEEAVQSGPVPGFGKKLSSLLAFQSALGHIRSGTLDKFKESFDKALNGGEGFSVAANNCKGSCIVQFDEACADVVVEQTNWDTSKVREKLLRDIDAHIANVRATKISELTSSYEEKLKQALSGPVEALLDGANSDTWSSIRNLLKRETLSAISGFSAALIGFDMDDETRQKMLSSLEDYARGLVEGKAREEAGRVLMRMKERFTMLFSHDSDSMPRVWTGKEDIRAITKTARSSSLKLLSVMAAIRLDDADSDNIEKVLAVALVEPSPSSNGTRSMTVVDPLASSSWEQVSSSKTLITPVQCKSLWRQFKTETEYSVSQAISAQEANKRNNNWLPPPWAIAALVILGFNEFMTLLRNPLYLGVIFVGYLLIKALWVQLDISGEFRNGALPGLISLSSKFIPTIMNLMKKLAEEGQNHAANNPQRTPSKNSYNESHAVSSSSSSNLTALDNGAEYASSVKEE 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02250 750 MobiDBLite consensus disorder prediction 705 740 - -
Spst4g02250 750 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 1 230 IPR030386 GO:0005525
Spst4g02250 750 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 43 251 - -
Spst4g02250 750 Pfam Sey1 three-helix bundle domain 311 702 IPR046758 -
Spst4g02250 750 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 259 - -
Spst4g02250 750 Coils Coil 196 216 - -
Spst4g02250 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 248 IPR027417 -
Spst4g02250 750 MobiDBLite consensus disorder prediction 704 750 - -
Spst4g02250 750 PANTHER PROTEIN SEY1 5 310 IPR008803 -
Spst4g02250 750 Gene3D - 40 223 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02250 Spst-Chr4 63280112 63288411 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02250 K22698 - gmx:100777656 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00263 5 2315284 2322430 Spst4g02250 4 63280112 63288411 PCT