Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02248 ATGGCTTCAGTTGGTGCAGTCAAATTCTTGTTGTGCCTAGCTCTATGGCTCTGGAACTTTCTACCTCCTTGTCAAGTGGGAGGTGGCACAGCAGGGTGCCCTTTGGCTGCAACCCTCTCTCAGAACTTCAGTGTTCTGCTGCTTGAAAGAGGGGGTGTTCCTTTCACCAACCCCAATGTCTCTTTTCTTGAGAACTTCCACATTACCTTGGCAGACATTTCTCCAACTTCGGCTTCTCAATACTTCATCTCAACTGATGGAGTCTACAATTCAAGGGCAAGGGTCTTAGGAGGTGGCAGTTCTATCAATGCTGGCTTCTACACTAGAGCAAACCCAAGGTTTGTAAAGAAGGTGGGGTGGGATGCTAAGCTTGTAAATCAGTCATATCCATGGATTGAAAAGCAAATTGTTCACCGTCCAACGTTTTCACCTTTTCAGAGAGCAGTGAGGGACAGTCTAGTAGACTCTGGTGTGTCACCTTTTAATGGCTTCACCTATGATCATCTCTATGGAACCAAAGTTGGTGGAACCATTTTTGACAGATTTGGCCGCCGCCACACGGCTGCGGAATTGCTTGCTTCGGGGAGCCATGACAAACTTACTGTTTTGGTCTATGCCACTGTCCAAAAGATTGTGTTTGATACAAAAGGAAAGAGACCAAAAGCTGTGGGGGTTATTTTTCAAGATGAAAATGGGAAACAGCATGAGGCTATTCTGGCAAATGATAGGCATAGTGAAGTGATAATGTCTAGTGGGGCAATTGGGACTCCTCAATTGCTAATGCTTAGTGGAATTGGACCAAAAGAAGAACTCCAGAAGTTGAACATCCCAGTGGTCCTTGACAATCATTTTGTTGGGAAAGGAATGGTAGACAATCCCATGAACACAATGTTTGTTCCTTCTAAAAGACCAGTTCGTCAGTCACTCATAGAAACTGTTGGTATCACCAAGATGGGTGTGTACATTGAGGCTAGCAGTGGGTTTAGTCAGTCCAATGATAGCATTCATTGCCACCATGGCATCATGTCAGCTGAGATTGGGCAGCTGTCCACAATTCCTCCTAAGCAAAGATCACCAAAAGCTGTTCAAGAATTTATCAAGAATAAGAAAGAACTACCGATTGAAGCATTTAAGGGAGGCTTTATTTTGTCAAAAGTTGCCAATCCATGGTCAGTTGGTGAGCTCAAGCTGGTCAACACCAATGTGCATGACAACCCTGCTGTTACCTTCAACTACTTCAGTCATCCATACGATCTTCAGCGCTGTGTTAAGGGGATCCGCTTGGCCATTAAGGTTGTCCAGTCAAAACACTTCACAAACTACACTTTGTGCGACAGAAAAACCGCAGATGAACTGCTCAACCTCACTGTCAAGGCTAATGTCAACTTCATACCCAAGCATGCCAATGACACAAAGTCACTAAAGCAGTTCTGCAAAGACACTGTGATCACAATTTGGCACTACCATGGAGGGTGCCGTGTGGGGAAGGTGGTCAACCCTGATTACATGGTCCTTGGTGTTGACAGCCTCCGTGTGGTAGATGGCTCAACATTTGATGAATCACCAGGAACAAATCCTCAAGCCACTGTCATGATGATGGGCAGGTACATGGGACTGAAGATTTTGAGAGACAGGTTGGGGAAATTGTCTGGTATATAA 1659 0.4509 MASVGAVKFLLCLALWLWNFLPPCQVGGGTAGCPLAATLSQNFSVLLLERGGVPFTNPNVSFLENFHITLADISPTSASQYFISTDGVYNSRARVLGGGSSINAGFYTRANPRFVKKVGWDAKLVNQSYPWIEKQIVHRPTFSPFQRAVRDSLVDSGVSPFNGFTYDHLYGTKVGGTIFDRFGRRHTAAELLASGSHDKLTVLVYATVQKIVFDTKGKRPKAVGVIFQDENGKQHEAILANDRHSEVIMSSGAIGTPQLLMLSGIGPKEELQKLNIPVVLDNHFVGKGMVDNPMNTMFVPSKRPVRQSLIETVGITKMGVYIEASSGFSQSNDSIHCHHGIMSAEIGQLSTIPPKQRSPKAVQEFIKNKKELPIEAFKGGFILSKVANPWSVGELKLVNTNVHDNPAVTFNYFSHPYDLQRCVKGIRLAIKVVQSKHFTNYTLCDRKTADELLNLTVKANVNFIPKHANDTKSLKQFCKDTVITIWHYHGGCRVGKVVNPDYMVLGVDSLRVVDGSTFDESPGTNPQATVMMMGRYMGLKILRDRLGKLSGI 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02248 552 ProSitePatterns GMC oxidoreductases signature 2. 252 266 IPR000172 GO:0016614|GO:0050660
Spst4g02248 552 Gene3D - 138 484 - -
Spst4g02248 552 Gene3D - 26 534 IPR036188 -
Spst4g02248 552 SUPERFAMILY FAD/NAD(P)-binding domain 26 544 IPR036188 -
Spst4g02248 552 PANTHER OSJNBA0019K04.7 PROTEIN 26 546 - -
Spst4g02248 552 PIRSF Alcohol_oxidase 26 551 IPR012132 GO:0050660
Spst4g02248 552 Pfam GMC oxidoreductase 389 535 IPR007867 GO:0016614
Spst4g02248 552 Pfam GMC oxidoreductase 26 293 IPR000172 GO:0016614|GO:0050660
Spst4g02248 552 SUPERFAMILY FAD-linked reductases, C-terminal domain 289 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02248 Spst-Chr4 63268014 63274418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02248 26 545 Miscellaneous Gene Families AT5G51950 53.422 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02248 K15403 - gmx:100788704 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00265 5 2331435 2336878 Spst4g02248 4 63268014 63274418 PCT