Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01878 ATGGATTTTAGCCAACAGCTTCTGTCCAAGATTGCCACCAGTGACAAACATGGAGAGAATTCTCCATATTTTGATGGGTGGAAAGCATATGAGAGAAACCCATTTCACCCAACAAAAAATCCTCAAGGTGTTATCCAGATGGGTCTTGCTGAAAATCAACTAAGCTTTGATCTGATTGAAGAGTGGATTTTGAGTAATCCCGAGGCCTCCATTTGCACTCCTGAAGGAGTGCATCAGTTCAGAAATGTTGCCAACTTTCAGGACTATCACGGGTTGCAGGAGTTCAGAAATGGTATTGCAAATTGGATGTCAAAGGTGAGAGGAGGTAGGGTCAGGTTTGATCCAGACCGTATATTGATGAGTGGAGGGGCAACAGGAGCAAACGAGCTAATTATGTTCTGCTTGGCTGATCCTGGAGATGCCTTTATGATTCCCACCCCATTTTACCCAGCATTCGTTCGTGATTTGTGTTGGAGAACGGGGGTGCAGTTAATTCCTGTTCACTGTCATAGTTCCAACAACTTCAAGATAACAAGAGAAGCTCTTGAAGAAGCATACAAAAAGGCCAAAGAGGATAACATCAACGTTAAGGGTTTGATCATAACAAACCCATCTAACCCTTTGGGCACTACCTTAGACAAGGACACGTTGAAGAGTCTAGTGAGCTTCATCAACGAGAAAAACATCCACTTTGTTTGTGATGAAATCTATGCAGCAACTGTGTTCAGTAGTTCCCCCAGTTATGTAAGCGTGGCTGAAGTGATCCAAGAAATGGAACATTGCAACCGCGACCTAATTCATGTCATTTATAGTTTGTCCAAAGACATGGGGTTCCCTGGTTTCAGAGTTGGCATAGTTTATTCATTCAATGATGAAGTGGTGAGTTGTGGAAGGAAAATGTCTAGCTTCGGGTTAATCTCATCGCAAACTCAACACATGCTGGCTTCAATGCTTTCGGATGAAAAGTTTGTAACGAAGTTTCTTTCTGAGAATTCAAGAAGGTTAGAAGAAAGGCACGACAAGTTCATGAAGGGGCTTGAAGAGGTTAACATTACTCGATTTCCTAGCAATGCAGGAATTTTCTGCTGGATGAACTTGAAGAGTTTGTTGAAGGAACCAACGTTTGAAGCTGAGTTGAAGCTGTGGCGTGTGATTATTAACGAGGTGAAGCTCAATGTGTCACCAGGCTCTTCTTTCGACTGTTCTGAGCCTGGTTGGTTTAGGGTTTGCTTTGCCAACATGGATGATGAAACAATGGATATTGCACTCAACAGGATTCGTGCATTCGTGGGGAAAGAAACAAAGAAGCCAGTGGGACTGAAACGTTGGCAACCGAATCTCAGGCTCAGTTTTTCTTCAAGGAGGTTTGATGAGAGTGTTATGTCTCCCCATTCACCTATTGCATCACCTCTTGTCCAAGCCACTTGA 1428 0.4321 MDFSQQLLSKIATSDKHGENSPYFDGWKAYERNPFHPTKNPQGVIQMGLAENQLSFDLIEEWILSNPEASICTPEGVHQFRNVANFQDYHGLQEFRNGIANWMSKVRGGRVRFDPDRILMSGGATGANELIMFCLADPGDAFMIPTPFYPAFVRDLCWRTGVQLIPVHCHSSNNFKITREALEEAYKKAKEDNINVKGLIITNPSNPLGTTLDKDTLKSLVSFINEKNIHFVCDEIYAATVFSSSPSYVSVAEVIQEMEHCNRDLIHVIYSLSKDMGFPGFRVGIVYSFNDEVVSCGRKMSSFGLISSQTQHMLASMLSDEKFVTKFLSENSRRLEERHDKFMKGLEEVNITRFPSNAGIFCWMNLKSLLKEPTFEAELKLWRVIINEVKLNVSPGSSFDCSEPGWFRVCFANMDDETMDIALNRIRAFVGKETKKPVGLKRWQPNLRLSFSSRRFDESVMSPHSPIASPLVQAT 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01878 475 Gene3D Aspartate Aminotransferase, domain 1 33 425 IPR015422 GO:0003824
Spst4g01878 475 CDD AAT_like 85 428 - -
Spst4g01878 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 117 137 - -
Spst4g01878 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 265 289 - -
Spst4g01878 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 47 73 - -
Spst4g01878 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 229 252 - -
Spst4g01878 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 139 160 - -
Spst4g01878 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 80 96 - -
Spst4g01878 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 297 320 - -
Spst4g01878 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 193 217 - -
Spst4g01878 475 SUPERFAMILY PLP-dependent transferases 15 431 IPR015424 -
Spst4g01878 475 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 8 428 - -
Spst4g01878 475 Coils Coil 172 199 - -
Spst4g01878 475 Gene3D - 67 320 IPR015421 GO:0003824
Spst4g01878 475 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 271 284 IPR004838 GO:0003824|GO:0009058|GO:0030170
Spst4g01878 475 Pfam Aminotransferase class I and II 45 426 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01878 Spst-Chr4 59341275 59344195 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01878 K20772 - gmx:100813347 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01878 4 59341275 59344195 Spst4g01878 4 59341275 59344195 ECH
Spst1g01119 1 13572372 13575470 Spst4g01878 4 59341275 59344195 PCT