Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01119 ATGGCTTTAGGGACCAACAGTTTCCAGCTTTTGTCCAACATTGCAACCAACGACAAGCATGGAGAAAACTCTCCTTATTTTGATGGGTGGAAGGCCTATGAATCAAACCCTTTTCACCCCACAAAAAATCCTCAGGGTGTTATTCAGATGGGTCTTGCAGAAAATCAGCTGTGCTTTGATCTGATTGAAGAGTGGATAATAAATAATCCCAAGGCCTCCATTTGCACTCCTGAAGGAGTGAAATGGTTCAAATATATTGCAAACTTTCAGGACTATCATGGGTTGCCAGAGTTCAGAAATGCTGTGGCAAATTTTATGTCAAAAGTGAGAGGTGGGAGAGTGAGATTTGATCCTGACCGTATATTGATGGGTGGTGGGGCCACTGGGGCAAACGAGCTAATCATGTTCTGTTTGGCTGATCCTGGAGATGCTTTTCTGGTTCCTAGCCCTTATTATCCAGCATTTGTCCGAGACTTGTGTTGGAGAACTAAGGCGCGACTAATTCCTGTTGAGTGTCACAGCTCCAACAACTTTAACATAACAAGGGAGGCTCTTGAAGAAGCATATAGCAAAGCAAAAGATGGCAATATCAACGTCAAAGGGTTGATCATAACAAACCCTTCGAACCCTTTAGGAACCACCATGGACAGGGAAACACTCAAGAGCATTGTGGGCTTCATCAATGAGAAGAACATCCACTTAGTGTGTGATGAAATCTACGCTGCCACAGTGTTCAGAGCCCCTTGCTTTGTGAGTGTCTCTGAAGTGATGCAAGATGTGGAGCATTGTAATAAAGACCTTATTCACATTGTTTATAGTTTGTCTAAGGACCTGGGGATTCCGGGGTTTAGAGTTGGGATAGTTTATTCATACAATGATAAAGTGGTGAACAATGGGAGGAAAATGTCAAGCTTTGGATTAGTCTCAAGTCAGACACAGTATTTACTGGCTGCACTGCTTTCGGATGACGAGTTTGTGGAGAGGTTTCTGGCAGAGAGTGCAAGAAGGTTGGCTGCAAGGCACAACCACTTCACAAAGGGGCTTGAAAAGGTGAACATTACTTGCTTGCCAAGCAATGCAGGGCTTTTCGTTTGGATGAACTTGAGGGGCTTGCTCAAGGAAAAAACATTTGAAGGTGAAATGATGCTATGGCGAGTGATCATCAATGAGGTGAAGCTTAATGTGTCACCAGGGTCAGCTTTCAATTGTTCTGAGCCTGGTTGGTATAGGGTGTGCTTCGATAACATGGATGATGAGACTGTGGATGTTGCAGTCAAGAGAATCAGAGCATTTGTTGGGAAAGAGACAGGAAAACCAGTGGAACTCAAACGTTGGAAAAGTAACCTTAGACTCAGCTTCTCCTCAAGAAGATTTGATGAGAATGTTATGTCACCTCACATGATGTCACCCCATTCACCAATGCCTCACTCACCCCTTGTCAGAGCCACTTAG 1452 0.4401 MALGTNSFQLLSNIATNDKHGENSPYFDGWKAYESNPFHPTKNPQGVIQMGLAENQLCFDLIEEWIINNPKASICTPEGVKWFKYIANFQDYHGLPEFRNAVANFMSKVRGGRVRFDPDRILMGGGATGANELIMFCLADPGDAFLVPSPYYPAFVRDLCWRTKARLIPVECHSSNNFNITREALEEAYSKAKDGNINVKGLIITNPSNPLGTTMDRETLKSIVGFINEKNIHLVCDEIYAATVFRAPCFVSVSEVMQDVEHCNKDLIHIVYSLSKDLGIPGFRVGIVYSYNDKVVNNGRKMSSFGLVSSQTQYLLAALLSDDEFVERFLAESARRLAARHNHFTKGLEKVNITCLPSNAGLFVWMNLRGLLKEKTFEGEMMLWRVIINEVKLNVSPGSAFNCSEPGWYRVCFDNMDDETVDVAVKRIRAFVGKETGKPVELKRWKSNLRLSFSSRRFDENVMSPHMMSPHSPMPHSPLVRAT 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01119 483 CDD AAT_like 88 430 - -
Spst1g01119 483 SUPERFAMILY PLP-dependent transferases 15 433 IPR015424 -
Spst1g01119 483 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 11 430 - -
Spst1g01119 483 Gene3D - 70 322 IPR015421 GO:0003824
Spst1g01119 483 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 273 286 IPR004838 GO:0003824|GO:0009058|GO:0030170
Spst1g01119 483 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Spst1g01119 483 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 267 291 - -
Spst1g01119 483 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Spst1g01119 483 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Spst1g01119 483 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Spst1g01119 483 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Spst1g01119 483 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Spst1g01119 483 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 299 322 - -
Spst1g01119 483 Gene3D Aspartate Aminotransferase, domain 1 36 427 IPR015422 GO:0003824
Spst1g01119 483 Pfam Aminotransferase class I and II 48 428 IPR004839 GO:0009058|GO:0030170
Spst1g01119 483 MobiDBLite consensus disorder prediction 464 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01119 Spst-Chr1 13572372 13575470 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01119 K20772 - gmx:100775969 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01119 1 13572372 13575470 Spst1g01119 1 13572372 13575470 ECH
Spst1g01119 1 13572372 13575470 Spst4g01878 4 59341275 59344195 PCT