Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01867 ATGAAATGTGTCGGCAATAGTGGGGATTGGCGTGGGCGTGAAGGGGAAGAAGTAATAAGATTGGCTTGTGCTCTTCTTTTGGTGACACTGCTAAGCTCAGAGGTAGCTGAGAGCAGAAAATCCAAAACTGTTAGCACTTCCTTTGAGTACAAAGCTATAAATTGCAGGGCTTATAGTGCTTCATTGACGGATTTTGGTGGTGTTGGAGATGGAAAGATATCAAATACAAAGGCCTTTAAGTCTGCAATCAGTCATCTGAGTCAATATGCTTCTAAAGGGGGGGCTCAGCTCTATGTTCCTGCAGGAAAATGGCTGACTGGGAGTTTTAGTCTTTTGAGTCATTTCACTCTCTATCTGAACAAAGATGCCGTTCTCCTTGCATCTCAGATAATGTTAACTGATTTTCTGACTAAGCCACAATTTCTTTGTATGTCCTCAAGTTGGCTTCATCTGCCCTTTCTTGCACCTTTCCTTTTGGCAGCATTTGGGGAGAATTATTTCCCAAGTCTGATAAAAAAACAAAAGAAACAAAAAGTCAAGGAAGTGATTAGGTGCATGGGAAAAGAAATTCTGAAAGTGGACTTCATTGATGGAAAATTAGATATTAGTGAGTGGCCTGTGATAGAACCACTCCCATCGTACGGTAGAGGAAGAGATGCTGCAGCAGGAAGGTACACCAGCCTCATATTTGGAACAAACCTCACTGATGTTATTGTCACAGGTGACAATGGCACCATAGATGGCCAGGGAGCATTTTGGTGGCAGAAATTTCACAAGAAAAAGTTGAAGTACACTCGCCCCTACTTGATTGAATTAATGTTCTCCGACAACATTCAAATTTCGAATTTGACCCTCCTAAATTCTCCATCATGGAATGTTCATCCTGTTTATAGTAGCAATATTATTATTAAAGGCCTCACCATTATCGCTCCTGTCCCATCTCCAAACACTGACGGCATCAACCCAGATTCTTGCACAAATACCAGAATTGAAGACTGCTACATAGTTTCTGGGGATGACTGTGTAGCAGTGAAAAGTGGGTGGGATGAGTATGGCATAAAGTTTGGATGGCCCACAAAACAACTAGTGATCAGACGGCTGACATGCATTTCCCCAGAAAGTGCAGCCATTGCCTTGGGAAGTGAGATGTCAGGTGGAATCCAGGATGTCAGAGCTGAGGACATCACAGCCATCCATACAGAATCTGGGGTCAGAATCAAGACTGCAGTAGGGAGAGGAGGGTATGTGAAGGACATATATGTCAAGGGAATGACCTTGCACACCATGAAATGGGTGTTTTGGATGACTGATGTGGTGGCTGACAATGTGACCATGGCTGCTAGGTTGGAAGGAATCTCCAATGACCCTTTTACTGGAATCTGCATTTCCAATGTGACCATTAAGATGGCAGCCAAGGCCAAAAAACAGCCATGGACATGTACTGACATTGAAGGGATCACAAGTGGGGTGACTCCTAAGCCATGCAATTCTTTAACTGATCAAGGGAAGGAGAACATCAAAGCATGTGATTTCCCCACAGAGAATCTACCAATTGATTCGCTGAAGCTTAAGAAGTGTACTTACGGAATTAAACATGAATGA 1602 0.4313 MKCVGNSGDWRGREGEEVIRLACALLLVTLLSSEVAESRKSKTVSTSFEYKAINCRAYSASLTDFGGVGDGKISNTKAFKSAISHLSQYASKGGAQLYVPAGKWLTGSFSLLSHFTLYLNKDAVLLASQIMLTDFLTKPQFLCMSSSWLHLPFLAPFLLAAFGENYFPSLIKKQKKQKVKEVIRCMGKEILKVDFIDGKLDISEWPVIEPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGAFWWQKFHKKKLKYTRPYLIELMFSDNIQISNLTLLNSPSWNVHPVYSSNIIIKGLTIIAPVPSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGWPTKQLVIRRLTCISPESAAIALGSEMSGGIQDVRAEDITAIHTESGVRIKTAVGRGGYVKDIYVKGMTLHTMKWVFWMTDVVADNVTMAARLEGISNDPFTGICISNVTIKMAAKAKKQPWTCTDIEGITSGVTPKPCNSLTDQGKENIKACDFPTENLPIDSLKLKKCTYGIKHE 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01867 533 Pfam Pectate lyase superfamily protein 62 114 IPR024535 -
Spst4g01867 533 SUPERFAMILY Pectin lyase-like 55 498 IPR011050 -
Spst4g01867 533 Gene3D - 35 490 IPR012334 -
Spst4g01867 533 Pfam Glycosyl hydrolases family 28 227 469 IPR000743 GO:0004650|GO:0005975
Spst4g01867 533 PANTHER PECTIN LYASE-RELATED 27 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01867 Spst-Chr4 59256442 59261572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01867 201 528 Glycoside Hydrolase AT3G61490 72.423 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01867 - - gmx:100787980 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01867 4 59256442 59261572 Spst10g00928 10 10044044 10045397 PCT