Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00928 ATGCTGTTATTCTTGCATCACAGTGGAATAGACCCAGATTCATGTATAAACGTTTGGGTTGAAGATTGGTACATTGTTTCTGGTGATGATTGCATTTCAGTAAAGAGTGGACGGGATGAGTATGGGATTAAATCTGCAATGCCATCCCAACACCTAGTCATTAGAGGGATTACTGGTAAATCCCCTGACAGTGCCATGATTGCCTTAGGCAATGAAATGTCTGGAGGAATCTTCGATGTTAGAGTTGAAGGTCTCACTGCGATCGACACTGAATCAGCTATTAGAATCAAAACAGCATTTGGTAGAGGGGGATATGTGAAGAACATATTTGTCTAA 336 0.4107 MLLFLHHSGIDPDSCINVWVEDWYIVSGDDCISVKSGRDEYGIKSAMPSQHLVIRGITGKSPDSAMIALGNEMSGGIFDVRVEGLTAIDTESAIRIKTAFGRGGYVKNIFV 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00928 111 PANTHER PECTIN LYASE-RELATED 8 111 - -
Spst10g00928 111 Pfam Glycosyl hydrolases family 28 9 109 IPR000743 GO:0004650|GO:0005975
Spst10g00928 111 Gene3D - 6 111 IPR012334 -
Spst10g00928 111 SUPERFAMILY Pectin lyase-like 8 110 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00928 Spst-Chr10 10044044 10045397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00928 9 110 Glycoside Hydrolase AT2G23900 68.627 3.19e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00928 - - csav:115715951 158.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00928 10 10044044 10045397 Spst10g00928 10 10044044 10045397 ECH
Spst4g01867 4 59256442 59261572 Spst10g00928 10 10044044 10045397 PCT