Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01834 ATGAGCTTGGATATGGTTATGACTGATTGTGGTACTATGCCTTACTTGAGAGGCTGCTTCTTTGATATTGGTTCAAGATGTGCATTGAGCCTTGCTAATGTGCGCTTTCATTTTGAATTTGAGCCATACCAAATCAATCCTCAAACTGACTTGGCAGTTATTAAACCGGAGATGATGAAGCCTTATGTCTGGCTTCAGACTTCAGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTGATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGCCGCTCAAACAAGGAACGCAAATCTTATGATGAGAAATTTGTTAGAATAGACACAGAGAGGCTGTGTGAGTTGACCTCTGCTGCAGACAGCCTTCAGTTAAAACCGTTGGTCGATCTCACAAGCCGTGCACTTGCTCGAATAATTGAAGGGAAAACGCCAGAGGAGATACGTGATATATTTCATTTGCCTGATGATCTTACAGAGGAAGAAAAGTTGGAGCCACTAAGAAATATAACTGCCGACCCAAGGATCAGGCTTTTGAACCGTTTGTATGCCAAAAAGAGAAAAGAACTAAAAGAGCGGGAAAGGTCAAAGAATTCTGAAGTTGAAGAACATGTGGATGATCGTTCAGTTGATGACCTATTGTCATTTATTAATGGAAATGATGGAGATCCAAAGGGAGTTAAAACTTCAAAGAATAAAAAGAAGAACCGGAGAAAAAAAGAGCAACAGAAGAACTCTTCTTTGAAGGAGGTATCTGAACTGAACAAAAAGGAGATAAATGGTCATGATATTAGACCCCGAAGTTCTGAAGCCGAGAGCATTAGTGAGACCTCAAATTTACACAATGCAGAAGATGATACTTCTAATCCTACGCCTGAGTTTGATGACGGTTATATAGATGATGAGATTGATCCCGCCTTAAAGGAAAAACTGGACAGGTGGGATTATTTCCTGACTGAATTCGCATTGCTGAATAGATCTTATATGAACTATTGCATGCCAGAGGAAAAGGCTGTGGAATGA 1131 0.3979 MSLDMVMTDCGTMPYLRGCFFDIGSRCALSLANVRFHFEFEPYQINPQTDLAVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRDIFHLPDDLTEEEKLEPLRNITADPRIRLLNRLYAKKRKELKERERSKNSEVEEHVDDRSVDDLLSFINGNDGDPKGVKTSKNKKKNRRKKEQQKNSSLKEVSELNKKEINGHDIRPRSSEAESISETSNLHNAEDDTSNPTPEFDDGYIDDEIDPALKEKLDRWDYFLTEFALLNRSYMNYCMPEEKAVE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01834 376 MobiDBLite consensus disorder prediction 249 336 - -
Spst4g01834 376 SUPERFAMILY Skp1 dimerisation domain-like 135 204 IPR036296 GO:0006511
Spst4g01834 376 SUPERFAMILY POZ domain 61 125 IPR011333 -
Spst4g01834 376 SMART skp1_3 60 161 IPR001232 GO:0006511
Spst4g01834 376 Gene3D Potassium Channel Kv1.1; Chain A 57 206 IPR011333 -
Spst4g01834 376 PANTHER SKP1 59 201 IPR016897 GO:0006511
Spst4g01834 376 FunFam SKP1-like protein 21 isoform X1 57 207 - -
Spst4g01834 376 MobiDBLite consensus disorder prediction 279 306 - -
Spst4g01834 376 MobiDBLite consensus disorder prediction 307 323 - -
Spst4g01834 376 Pfam Skp1 family, tetramerisation domain 63 125 IPR016073 GO:0006511
Spst4g01834 376 Coils Coil 267 293 - -
Spst4g01834 376 Pfam Skp1 family, dimerisation domain 162 199 IPR016072 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01834 Spst-Chr4 58650258 58656548 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01834 - - gmx:100794666 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01834 4 58650258 58656548 Spst4g01834 4 58650258 58656548 ECH
Spst4g01834 4 58650258 58656548 Spst1g01078 1 13234743 13239221 ECH
Spst1g01078 1 13234743 13239221 Spst4g01834 4 58650258 58656548 PCT