Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01078 ATGGCAGAAATTGATATGGCAGTTATTAAACCTGAGATGATGAAGCCTTATATCTGGCTTGAGACATCAGATGGTTCAATCCAGCAAGTTGAACAAGAAATTGCAATGTATTGTCCTCTAATTTGTCAAGAAATAATACAAAAAGGGATGGGATCTTCCAAGAATTGTGCAATATGTCTCCCTCAACGAGTCAGTCCTTCAACATTGAGCTTAATTCTTGATTATTGTCGTTTCCATCAAGTACCAGGTCGCTCAAACAAGGAACGGAAGTCTTATGATGAGAGATTCATTAGGATGGACACAAAGCGGCTCTGTGAGTTGACATCTGCTGCAGACAGCCTTCAATTGAAGCCATTGGTTGATCTTACAAGTCGGGCACTTGCTCGGATAATCGAAGGAAAATCTCCAGAGGAGATACGGGAAATATTTCATCTGCCTGATGATCTAACTGAGGAAGAGAAGTTGGAGCCCTTAAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAATAGACTGTATGCCAAAAAGAGGAAAGAACTAAAAGAGCGGGAGAGGTTGAAGAATGTTGAAGTTGAAGAAGAGCATGTAGATAAACGTTCAGTTGATGATCTTTTGTCTTTTATTAATGGAAATGATGAAGATCCAAAAGGCATTAAAACTTCTAAGAATAAAAAGAAAAATAGAAGGAAAAAAGAGCAACAACAGAAGAACTCTTCTCTGAAAGAAACTTCTGAAGTGAATAAGGAAGTAAATGGTCAAAATATTAGACACCCAAATTCTGAAGCTGATAGAATTGCTGAGACCTCAATTTCAAATACAGAAGATGTTTTTGCTCATAAAGAGTTTGATGATGGAGATATAGATGATGGGATTGATCCTGCACTTAAGGAAAAAATTGACAGGGAAGTTGAAGATTTTGCCCGCCGATTGAATTCCGACTGGCCAGAGAGGATGCAAGAACTTTTATCAACTGGACAAGAAAGGAAGACAATGCTTTTTACACCTAACGGAAATAGTTTTATACGTTTTGATCTAAAGGCTCCTTTACCTGATAATGGATTGGAGAGGAGACAAAGAATCGTATCTTTGGACTATGAGGCTGATCCTGATACATATATAACCTTTCCATTTCCTGTAATTCCCCTTGCCTAG 1155 0.3827 MAEIDMAVIKPEMMKPYIWLETSDGSIQQVEQEIAMYCPLICQEIIQKGMGSSKNCAICLPQRVSPSTLSLILDYCRFHQVPGRSNKERKSYDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERERLKNVEVEEEHVDKRSVDDLLSFINGNDEDPKGIKTSKNKKKNRRKKEQQQKNSSLKETSEVNKEVNGQNIRHPNSEADRIAETSISNTEDVFAHKEFDDGDIDDGIDPALKEKIDREVEDFARRLNSDWPERMQELLSTGQERKTMLFTPNGNSFIRFDLKAPLPDNGLERRQRIVSLDYEADPDTYITFPFPVIPLA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01078 384 FunFam SKP1-like protein 21 isoform X1 12 162 - -
Spst1g01078 384 SUPERFAMILY POZ domain 16 80 IPR011333 -
Spst1g01078 384 PANTHER SKP1 14 155 IPR016897 GO:0006511
Spst1g01078 384 MobiDBLite consensus disorder prediction 240 261 - -
Spst1g01078 384 Coils Coil 170 190 - -
Spst1g01078 384 SMART skp1_3 15 116 IPR001232 GO:0006511
Spst1g01078 384 MobiDBLite consensus disorder prediction 207 261 - -
Spst1g01078 384 Coils Coil 224 244 - -
Spst1g01078 384 SUPERFAMILY Skp1 dimerisation domain-like 90 160 IPR036296 GO:0006511
Spst1g01078 384 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Spst1g01078 384 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Spst1g01078 384 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01078 Spst-Chr1 13234743 13239221 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01078 - - gmx:100809439 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01078 1 13234743 13239221 Spst1g01078 1 13234743 13239221 ECH
Spst4g01834 4 58650258 58656548 Spst1g01078 1 13234743 13239221 ECH
Spst1g01078 1 13234743 13239221 Spst4g01834 4 58650258 58656548 PCT