Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01710 ATGGAGACCCTACAGTGGGCGAAATTCCTGTACAAGCCTTCCACCATTACCACAAAAATCAACACTTGGGGGTTTTTCTTTTGGTTCCAACTATTGGTCACTCTGCAGAATCTTATTCCAATTGGCGTCCATCCTCTAAAGGGAAAGGTGGTATTTGGCATCTGGGAAAATGGGATTGTTTTCTGGGATTTTCATGGGGTTGGTGTTTGGCATCGCATTGATGGCTGGATGGGCGCGCATGATGAGGTACCGAAGCGCCAAGAGAACTTCAAAGGCAGTGTTGGAAATGATGTTGATGAATGGAGAATATCACAGGCAGCTGACATTAAACTCCTTTCATCCCTTAATAGAGATGATTTAAAGAAAATTTGTGGTGAAAGTTTGCCCGAGTGGATATCATTTCCTGTATATGAACAGGTGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTGGCAGAAGCTGCAACTTTAGTGATCAAAGAATCTGTTGAACCACTGTTAGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGCAAGCTCTCACTTGGAAATGTGGCCCCAAAAATTGAAGGTATTCGTGTTCAGAGCCTTACCAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGAGGTGATCCTAGTATTATTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTACAGGTTTTCAGCATTGTCCGTGTTATATTCCAACTTGCTGAGGAGATCCCTTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGCCAAAGCCCAAGATTGATTATACTTTGAAAGCTGTTGGTGGAAGTTTAACAGCTATTCCTGGAATCTCAGATATGATTGATGATACCGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGTATTCCTGTTGATGTCAGTGATCTGGAGCTTAAACCCCAAGGAAAACTTTCAGTGACTGTAGTGAAAGCAACTGCTTTAAAGAATATGGAAATGATTGGAAAGTCAGATCCTTATGTAGTCGTGTATATTCGACCATTGTTTAAGTATAAAACCAAAGTTGTTGATAACAACTTGAATCCTACTTGGAATGAGACATTTGATTTGATTGCAGAAGACAAGGAGACCCAATCACTTATTCTCGAGGTTCTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGTGCAGTTACCCCTTATTGATCTAGAAACACAAACTGAAAAGGAGATGGAATTGAGGCTGCTGCCATCACTTGATACACTGAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACAGTTAAGGTCTTCTATTATCAGTTTAACAAGGAAGAACAATTGGCTGCACTAGAAGCAGAGAAAAAGATACTAGAAGAAAGGAAGAAACTGAAAGAAGCAGGAGTCATAGGAAGCACAATGGATGCACTAGACGGAGCGGTATCTGTGGTAGGGTCTGGTGTAGGACTGGTTGGTACCGGTGTTGTTGCTGGTGCTGGTCTAGTTGGCAGTGGCATTGGTGCTGGAGCAGGGCTAGTTGGCAGTGGCATCGGTGCCGGAGTTGGCATTGTTGGCAGTGGTCTTGGAGCTGTTAGCAGTGGACTGAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGTCATAGTAGCTCCAAAAAGAGTGGCTCTTCAACTCCAGTCAATAATGCACAGGAAAATGGTGGTGGTGCAAAGCCTCTTTGA 1785 0.4308 METLQWAKFLYKPSTITTKINTWGFFFWFQLLVTLQNLIPIGVHPLKGKVVFGIWENGIVFWDFHGVGVWHRIDGWMGAHDEVPKRQENFKGSVGNDVDEWRISQAADIKLLSSLNRDDLKKICGESLPEWISFPVYEQVKWLNKKLTKLWPFVAEAATLVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFSIVRVIFQLAEEIPCISAVVVALLAEPKPKIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDVSDLELKPQGKLSVTVVKATALKNMEMIGKSDPYVVVYIRPLFKYKTKVVDNNLNPTWNETFDLIAEDKETQSLILEVLDKDIGQDKRLGIVQLPLIDLETQTEKEMELRLLPSLDTLKVKDKKDRGTLTVKVFYYQFNKEEQLAALEAEKKILEERKKLKEAGVIGSTMDALDGAVSVVGSGVGLVGTGVVAGAGLVGSGIGAGAGLVGSGIGAGVGIVGSGLGAVSSGLSKAGKFMGRTITGHSSSKKSGSSTPVNNAQENGGGAKPL 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01710 594 MobiDBLite consensus disorder prediction 566 586 - -
Spst4g01710 594 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 108 487 IPR045050 GO:0008289
Spst4g01710 594 PRINTS C2 domain signature 398 406 IPR000008 -
Spst4g01710 594 PRINTS C2 domain signature 351 363 IPR000008 -
Spst4g01710 594 PRINTS C2 domain signature 376 389 IPR000008 -
Spst4g01710 594 SMART C2_3c 335 432 IPR000008 -
Spst4g01710 594 MobiDBLite consensus disorder prediction 566 594 - -
Spst4g01710 594 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 136 319 IPR031468 GO:0008289
Spst4g01710 594 Coils Coil 461 488 - -
Spst4g01710 594 CDD C2 336 435 - -
Spst4g01710 594 CDD SMP_SYT 129 318 - -
Spst4g01710 594 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 138 318 IPR039010 -
Spst4g01710 594 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 332 462 IPR035892 -
Spst4g01710 594 Gene3D C2 domain 329 487 IPR035892 -
Spst4g01710 594 Pfam C2 domain 334 431 IPR000008 -
Spst4g01710 594 ProSiteProfiles C2 domain profile. 317 433 IPR000008 -
Spst4g01710 594 FunFam synaptotagmin-4 isoform X1 329 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01710 Spst-Chr4 57023131 57031723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01710 319 433 Lipid Metabolism Gene Families AT3G61300 31.897 1.15e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01710 - - gmx:100777838 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01710 4 57023131 57031723 Spst4g01710 4 57023131 57031723 ECH
Spst1g00982 1 12051832 12060495 Spst4g01710 4 57023131 57031723 PCT