Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00982 ATGGGTTTGTTTTCTGGGATTTTTCTGGGGATGTTATTCGGCATATCATTGATGGCTGCGTGGCAACGCATGATGGCGTACCGTAGCGCCAAGAGAATTGGAAAGGCAGTTGATATTAAACTCCTTGGGTCCCTTAACAGAGAAGATTTAAAGAAAATTTGTGGTGATAATTTTCCTGATTGGATATCTTTTCCTGTCTATGAGCAGGTAAAATGGCTAAACAAGCAGCTGTCCAAACTTTGGCCATTTGTTGCAGATGCAGCAACTTTGGTGATAAGAGAATCTGTTGAACCCCTATTGGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGCAAGCTGTCCCTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGTGTTCAGAGTCTGAAGAAAGGTCAAATCATTATGGACATTGATTTTCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCTGCACTCGTTGCATCAATCCCTATTCAGTTGAAAGATCTCCAGGTTTTCACCATTATTCGTGTCATATTCCAACTCGCTGATGAGATTCCTTGCATTTCAGCTGTTGTTGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACATTGAAGGCTGTTGGTGGAAGTTTGACAGCACTTCCTGGAATTTCAGATATGATTGATGATACTGTGAACTCAATTGTTTCCGACATGCTCCAATGGCCTCATAGGATTGTTGTACCTCTTGGAGGTATACCTGTTGATACTAGTGAACTAGAGCTTAAACCCCAGGGAACGCTTAGAGTGAATGTCATGAAAGCCAATGATCTAAAGAATATGGAAATTATTGGCAAGTCTGATCCTTATGCAGTGTTGCATATTCGACCACTGTTTAAAGTCAAAACTAAGGTTATTGATAACAACTTGAATCCTGTTTGGAATGAGGTATTTGACTTGATTGCAGAAGACAAGGAGACCCAGTCACTCATTGTTGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGCAAAATTACCACTTATTAATCTGGAAGCAGAAATTGAAAAGGAGTTTGAGTTGAGGCTGTTGCCATCACTTGATACACTGAAAGTGAAAGACAAAAAGGATCGAGGAACCTTGAAAATAAAGGTCTTTTATCACGAATTTGACAAGAAAGAACAATTGGTTGCACTAGAGGCAGAGAAAAAGATACTAGAAGAAAGGAAGAAACTTAAAGAGGAGGGAGTTATAGGAAGTACCATGGATGCGCTAGATGGAGCAGCATCGGTAGTTGGGTCCGGTGTTGGACTTGTGGGAAGTGGAATTGGTGCTGGAGCTGGACTTGTGGGGAGTGGAATTGGTGCTGGAGTTGGACTTGTGGGGAGTGGAATTGGCGCTGGAGCTGGACTTGTGGGGAGTGGACTTGGTGCAGGGGCTGGACTTGTAGGGAGTGGAATTGGTAGTGGAGCTGGGGCTATTGGCAGTGGCCTCGGTGCTGTTGGCAGTGGACTGACCAAAGCAGGGAAGTTTATGGGAAGGACGATTACCGGACAAGGGCCATCCAGAAAGAGTGGTTCAACTACTCCTGTCAATGTGGAGGAGGCTGGTGGTGGTGCAAAACCTCTGCTGCAGTAA 1644 0.4361 MGLFSGIFLGMLFGISLMAAWQRMMAYRSAKRIGKAVDIKLLGSLNREDLKKICGDNFPDWISFPVYEQVKWLNKQLSKLWPFVADAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKKGQIIMDIDFRWGGDPNIVLAVEAALVASIPIQLKDLQVFTIIRVIFQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNSIVSDMLQWPHRIVVPLGGIPVDTSELELKPQGTLRVNVMKANDLKNMEIIGKSDPYAVLHIRPLFKVKTKVIDNNLNPVWNEVFDLIAEDKETQSLIVEVFDKDIGQDKRLGIAKLPLINLEAEIEKEFELRLLPSLDTLKVKDKKDRGTLKIKVFYHEFDKKEQLVALEAEKKILEERKKLKEEGVIGSTMDALDGAASVVGSGVGLVGSGIGAGAGLVGSGIGAGVGLVGSGIGAGAGLVGSGLGAGAGLVGSGIGSGAGAIGSGLGAVGSGLTKAGKFMGRTITGQGPSRKSGSTTPVNVEEAGGGAKPLLQ 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00982 547 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 424 IPR045050 GO:0008289
Spst1g00982 547 MobiDBLite consensus disorder prediction 520 534 - -
Spst1g00982 547 Pfam C2 domain 264 355 IPR000008 -
Spst1g00982 547 MobiDBLite consensus disorder prediction 516 547 - -
Spst1g00982 547 CDD C2 266 363 - -
Spst1g00982 547 CDD SMP_SYT 59 248 - -
Spst1g00982 547 Gene3D C2 domain 259 418 IPR035892 -
Spst1g00982 547 SMART C2_3c 265 362 IPR000008 -
Spst1g00982 547 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Spst1g00982 547 ProSiteProfiles C2 domain profile. 247 365 IPR000008 -
Spst1g00982 547 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 264 391 IPR035892 -
Spst1g00982 547 FunFam synaptotagmin-4 isoform X1 259 417 - -
Spst1g00982 547 Coils Coil 391 418 - -
Spst1g00982 547 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00982 Spst-Chr1 12051832 12060495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00982 249 357 Lipid Metabolism Gene Families AT3G61300 31.818 3.86e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00982 - - vun:114183274 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00982 1 12051832 12060495 Spst4g01710 4 57023131 57031723 PCT