Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01428 ATGGAAGCGCGCGTAGGGATGGTGATGGAAGGGGGGAAGAGAACCCTCAACACCGACGGCGGCGCTGCCAGGTTCCTGGCTCAGAACAGCCACCAGCTCGGCACGCTGCATCAGCTTCTCGCCGGCGGCATCTCCGGCGCGTTTAGCAAAACCTGCACTGCCCCCCTTGCGCGCCTCACTATCCTGTTTCAGGTGCAAGGTATGCATTCTGATGTGGCAGCATTGAGCAATCCTAGTGTATGGAGGGAGGCATCGCGCATTATTAATGAAGAAGGGTTTAGAGCATTTTGGAAAGGCAATATGGTGACCATTGCTCATCGTCTCCCTTATTCTTCTGTCAACTTCTATGCCTATGAACGCTACAAGAATGTAATCACTGGCCTATTAAATTCACTGATGGGGGAGAGTCGTAAGGGAGATTCAAGTACAAACCTCCTTGTGCACTTTGTGGGTGGTGGTTTGGCAGGTATAACAGCTGCTTCTGCCACATATCCTTTGGATCTTGTGAGGACACGACTTGCAGCACAGAGAAGTACCATGTACTACCAGGGCATCTCACATGCTTTCAGTACCATCTGTAGAGATGAAGGTTTGTTGGGTCTGTATAAGGGGCTTGGAGCAACATTGTTGGGTGTCGGACCCAGTATAGCCATTAGTTTTTCTGTTTATGAGTGGTTGCGTTCTGTATGGCAATCACAAAGGCCTGATGATTCTACTTCTATGGTTGGTCTTGCCTGTGGCAGTCTGTCAGGAATTGCATCATCAACAGCAACATTTCCTTTGGATCTTGTAAGGCGTAGGATGCAATTAGAGGGTGCTGGCGGTCGAGCTCGTGTCTATAACACTGGCTTGTTTGGTGCATTTGGGCATATAATTCAAACCGAAGGGGTTCGAGGTTTGTACAGAGGAATTCTGCCTGAGTACTATAAGGTTGTTCCAAGTGTGGGCATTGTCTTTATGACTTATGAAACATTGAAGATGCTTCTATCAGGCATTCCTAGTTAG 1005 0.4846 MEARVGMVMEGGKRTLNTDGGAARFLAQNSHQLGTLHQLLAGGISGAFSKTCTAPLARLTILFQVQGMHSDVAALSNPSVWREASRIINEEGFRAFWKGNMVTIAHRLPYSSVNFYAYERYKNVITGLLNSLMGESRKGDSSTNLLVHFVGGGLAGITAASATYPLDLVRTRLAAQRSTMYYQGISHAFSTICRDEGLLGLYKGLGATLLGVGPSIAISFSVYEWLRSVWQSQRPDDSTSMVGLACGSLSGIASSTATFPLDLVRRRMQLEGAGGRARVYNTGLFGAFGHIIQTEGVRGLYRGILPEYYKVVPSVGIVFMTYETLKMLLSGIPS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01428 334 PRINTS Mitochondrial carrier protein signature 38 51 IPR002067 GO:0055085
Spst4g01428 334 PRINTS Mitochondrial carrier protein signature 202 220 IPR002067 GO:0055085
Spst4g01428 334 PRINTS Mitochondrial carrier protein signature 51 65 IPR002067 GO:0055085
Spst4g01428 334 PRINTS Mitochondrial carrier protein signature 99 119 IPR002067 GO:0055085
Spst4g01428 334 PRINTS Mitochondrial carrier protein signature 158 176 IPR002067 GO:0055085
Spst4g01428 334 PRINTS Mitochondrial carrier protein signature 247 269 IPR002067 GO:0055085
Spst4g01428 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 238 328 IPR018108 -
Spst4g01428 334 Gene3D Mitochondrial carrier domain 28 330 IPR023395 -
Spst4g01428 334 Pfam Mitochondrial carrier protein 241 330 IPR018108 -
Spst4g01428 334 Pfam Mitochondrial carrier protein 33 126 IPR018108 -
Spst4g01428 334 Pfam Mitochondrial carrier protein 143 231 IPR018108 -
Spst4g01428 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 33 124 IPR018108 -
Spst4g01428 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 143 229 IPR018108 -
Spst4g01428 334 PANTHER SOLUTE CARRIER FAMILY 25 29 329 - -
Spst4g01428 334 SUPERFAMILY Mitochondrial carrier 33 325 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01428 Spst-Chr4 52297711 52300775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01428 1 334 Organic Solute Cotransporters AT2G37890 64.497 6.95e-159 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01428 - K14684 gmx:100777563 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00625 1 8195690 8202182 Spst4g01428 4 52297711 52300775 PCT