Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00625 ATGATAAATTCGGATAACGACCTATGCGGGCATGGGAACAATGTGAAATTGTTGCAGCAGAAGAACCAGCAAGCGCAAGTGGGAACGGTGTCTCAGCTTCTCGCTGGTGGATTAGCCGGTGCTTTTGCCAAGACCTGCACTGCTCCACTGTCACGCCTCACCATCCTTTTTCAGGTGCAAGGTATGCAATTTGATGTGGCAGTGTTGAGCAACCCTAGCCTTTGGGGTGAGGCTTCACGTATTGTCAATGAAGAAGGATTTAGAGCATTTTGGAAAGGCAATTTGGTGACGATAGCTCATCGTCTCCCTTATTCTGCAGTCAACTTTTATGCTTATGAACGCTACAAGAATCTATTGCATTTATTTATGGGGGAGAAACTACAAGGAAATACCAATGCAAATCTCTTTGTGCACTTCGTAGGTGGTGGTTTGTCGGGCATAACATCTGCTACAGCTACATATCCTTTGGATTTGTTGAGAACACGACTTGCAGCACAGAGAAGTTCCATGTACTACAGGGGCATCTCACATGCTTTTAAAACCATTTACAGAGAAGAAGGGTTCTTGGGTCTCTATAAAGGACTTGGAGCTACATTGTTGAGTGTTGGGCCCAATATAGCTATAAGCTTTTCTGTTTATGATGGCTTACGTTTTTTTTGGCAGTCCCGAAGGCCTGATGATTCTACTGTCATGGTCAGTCTTGCATGTGGCAGTCTTTCAGGAATTGCATCGTCAACAGCAACATTTCCTTTGGATCTTGTAAGGCGCAGGATGCAGTTGGAAGGAGCTGGTGGTCGAGCACTTGTCTATAATACCAGTTTATTTGGGACATTTAAGCACATAGTTCGGAATGAAGGACTACGAGGTTTGTACAGAGGCATTTTGCCTGAGTACTACAAGGTTATACCAAGCGTGGGCATTGTCTTTATGACGTATGAGACATTGAAGATGTTTCTATCAAACATTCAAATTTCCAGGAAGCTAGGCAATCTTATTAGCAGTGGCTTGCAAGGTGATGGCTCTGCTGGTTCTTCATCTGGTGGCATCAATTCACAGTTATCTCTTTTAACACCAATGCAGATCGGTTTAAGTGACCATTTTGACATATTCCACTCACTGGTTCAATGTTTCTTGGTGAAGTCAGTAACACTATTGGGTGAAGACAAGGTTGTCTGCATCCTGAGGTTTAGAGTAGCATTTTTGGTGTTTCTAGCCTTGGGGTGCAGATTCTCTCTCATCACCAATGCAGAACAGTTTAATCAATAG 1266 0.4352 MINSDNDLCGHGNNVKLLQQKNQQAQVGTVSQLLAGGLAGAFAKTCTAPLSRLTILFQVQGMQFDVAVLSNPSLWGEASRIVNEEGFRAFWKGNLVTIAHRLPYSAVNFYAYERYKNLLHLFMGEKLQGNTNANLFVHFVGGGLSGITSATATYPLDLLRTRLAAQRSSMYYRGISHAFKTIYREEGFLGLYKGLGATLLSVGPNIAISFSVYDGLRFFWQSRRPDDSTVMVSLACGSLSGIASSTATFPLDLVRRRMQLEGAGGRALVYNTSLFGTFKHIVRNEGLRGLYRGILPEYYKVIPSVGIVFMTYETLKMFLSNIQISRKLGNLISSGLQGDGSAGSSSGGINSQLSLLTPMQIGLSDHFDIFHSLVQCFLVKSVTLLGEDKVVCILRFRVAFLVFLALGCRFSLITNAEQFNQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00625 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 118 IPR018108 -
Spst1g00625 421 SUPERFAMILY Mitochondrial carrier 27 315 IPR023395 -
Spst1g00625 421 Pfam Mitochondrial carrier protein 134 220 IPR018108 -
Spst1g00625 421 Pfam Mitochondrial carrier protein 27 119 IPR018108 -
Spst1g00625 421 Pfam Mitochondrial carrier protein 228 320 IPR018108 -
Spst1g00625 421 Gene3D Mitochondrial carrier domain 22 324 IPR023395 -
Spst1g00625 421 PANTHER SOLUTE CARRIER FAMILY 25 21 319 - -
Spst1g00625 421 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Spst1g00625 421 PRINTS Mitochondrial carrier protein signature 192 210 IPR002067 GO:0055085
Spst1g00625 421 PRINTS Mitochondrial carrier protein signature 148 166 IPR002067 GO:0055085
Spst1g00625 421 PRINTS Mitochondrial carrier protein signature 93 113 IPR002067 GO:0055085
Spst1g00625 421 PRINTS Mitochondrial carrier protein signature 32 45 IPR002067 GO:0055085
Spst1g00625 421 PRINTS Mitochondrial carrier protein signature 45 59 IPR002067 GO:0055085
Spst1g00625 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Spst1g00625 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 133 219 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00625 Spst-Chr1 8195690 8202182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00625 10 322 Organic Solute Cotransporters AT3G55640 67.823 3.22e-156 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00625 - K14684 gmx:100788060 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00625 1 8195690 8202182 Spst1g00625 1 8195690 8202182 ECH
Spst1g00625 1 8195690 8202182 Spst4g01428 4 52297711 52300775 PCT