Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01305 ATGGATTCTCGTTTGGCTCGAATCATGCTTCTCATGGCTTGCATTCTTCCAGCTTTGGTCGAATGCAGAGTCAGGCACTACAAATTTCATGTGGTGGCCAAACAAACCAATAGATTGTGTTCAAGCAAATCTATTGTCACTATTAATGGGAAGTTCCCAGGACCCACTCTTTATGCCAGAGAAGATGACACAGTGCTGGTCAAAGTCGTTAACCAAGTCAACCACAACGTTACCATCCATTGGCATGGTGTGAGGCAATTGAGAACTGGTTGGGCTGATGGACCCGCATATGTCACACAGTGCCCAATTCAACCAGGGCAAACCTATGTGTACAATTTCACCCTTACAGGGCAAAGAGGAACACTTCTTTATCATGCACATGTTAACTGGCTAAGGTCAACTCTCCACGGTGCCTTGGTTATCTTGCCAAAGAAAGGTGTACCTTATCCTTTCCCAAAGCCAGATGATGAATTGGTTGTGGTATTAGGAGAGTGGTGGAAATCTGATACTGAAGCTATTATCAATGAAGCACTAAAATCAGGATTAGCACCAAATGTCTCAGATGCTCATACCATTAATGGCCTTCCAGGGACAGTTACCAATTGTTCTTCACAGGATGTTTACAACCTCCCTGTGGAGGGTGGAAAGACCTACCTGCTGAGAATTGTCAATGCTGCACTCAATGAGGAGCTCTTCTTCAAAATTGCAGGTCACAAGCTCACAGTGGTAGAAGTTGATGCCACATATGTAAAGCCTTTCAAGATGGAAACAATTGTGATAGCCCCTGGCCAAACCACCAATGTCCTTCTAAATGCTGACCAAAAATCTGGCAAGTACTTGGTGGCGGCTTCTCCTTTCATGGATGCTCCTGTTGCTGTGGACAACTCAACTGCCACAGCAACATTGCACTACACAGGCACACTTGCCACCACCCCTACAGTTCTCACCACCCCACCTCCCAAAAATGCTACCATAGTTGCTAACAACTTTGTCAACTCTCTTAGAGGCCTCAACTCCAAAACATACCCTGTCAATGTCCCAGTAACAGTTGATCATTCACTTTTCTTCACAGTTGGGTTGGGGATTAACCCATGCCCATCTTGCAAAGCTGCAAATGGGAGCAGGGTGGTGGCCTCTGTCAACAATGTGACATTCCTTATGCCAACCATTGCCTTACTTCAGGCACATTATTTCAACATTAAAGGGGTGTTCACCACTGATTTCCCTGCTAATCCACCCCATGCATTCAACTACTCAGGACCTGGACCAGCCAATTTGAACACCGTAACTGGCACAAAGGTTTACAAGCTACCATTCAATGCCACAGTTCAGGTTGTTCTACAAGATACTGGAATCATCGCACCTGAGAATCACCCAGTACATCTTCACGGGTTCAATTTCTTTGTTGTTGGAAGAGGAGTAGGCAACTACAATCCCAATACTGACCCAAAGAACTTTAACCTTGTTGATCCTGTTGAAAGGAACACGGTTGGAGTACCAGCTGGAGGATGGACTGCAATTAGATTCAGAGCAGATAATCCAGGAGTTTGGTTCATGCACTGCCACTTGGAGGTGCACACAACATGGGGACTAAAGATGGCCTTTTTGGTGGAGAATGGCAAAGGTCCTAAGCAATCAGTGATACCCCCACCAAAAGATCTTCCCAAATGCTAA 1674 0.4546 MDSRLARIMLLMACILPALVECRVRHYKFHVVAKQTNRLCSSKSIVTINGKFPGPTLYAREDDTVLVKVVNQVNHNVTIHWHGVRQLRTGWADGPAYVTQCPIQPGQTYVYNFTLTGQRGTLLYHAHVNWLRSTLHGALVILPKKGVPYPFPKPDDELVVVLGEWWKSDTEAIINEALKSGLAPNVSDAHTINGLPGTVTNCSSQDVYNLPVEGGKTYLLRIVNAALNEELFFKIAGHKLTVVEVDATYVKPFKMETIVIAPGQTTNVLLNADQKSGKYLVAASPFMDAPVAVDNSTATATLHYTGTLATTPTVLTTPPPKNATIVANNFVNSLRGLNSKTYPVNVPVTVDHSLFFTVGLGINPCPSCKAANGSRVVASVNNVTFLMPTIALLQAHYFNIKGVFTTDFPANPPHAFNYSGPGPANLNTVTGTKVYKLPFNATVQVVLQDTGIIAPENHPVHLHGFNFFVVGRGVGNYNPNTDPKNFNLVDPVERNTVGVPAGGWTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGKGPKQSVIPPPKDLPKC 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01305 557 Pfam Multicopper oxidase 411 540 IPR011706 GO:0005507|GO:0016491
Spst4g01305 557 Pfam Multicopper oxidase 157 306 IPR001117 -
Spst4g01305 557 SUPERFAMILY Cupredoxins 17 168 IPR008972 -
Spst4g01305 557 FunFam Laccase 13 143 - -
Spst4g01305 557 CDD CuRO_3_LCC_plant 403 540 IPR034289 GO:0005507
Spst4g01305 557 CDD CuRO_2_LCC_plant 159 304 IPR034285 -
Spst4g01305 557 CDD CuRO_1_LCC_plant 27 143 IPR034288 GO:0005507
Spst4g01305 557 FunFam Laccase 155 340 - -
Spst4g01305 557 ProSitePatterns Multicopper oxidases signature 2. 520 531 IPR002355 GO:0005507
Spst4g01305 557 PANTHER MULTI-COPPER OXIDASE 31 545 IPR045087 -
Spst4g01305 557 Gene3D - 366 557 IPR008972 -
Spst4g01305 557 SUPERFAMILY Cupredoxins 151 321 IPR008972 -
Spst4g01305 557 SUPERFAMILY Cupredoxins 347 557 IPR008972 -
Spst4g01305 557 Pfam Multicopper oxidase 33 145 IPR011707 GO:0005507
Spst4g01305 557 ProSitePatterns Multicopper oxidases signature 1. 515 535 IPR033138 -
Spst4g01305 557 NCBIfam laccase 22 557 IPR017761 GO:0046274|GO:0048046|GO:0052716
Spst4g01305 557 Gene3D - 22 146 IPR008972 -
Spst4g01305 557 Gene3D - 154 339 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01305 Spst-Chr4 49885975 49889242 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01305 K05909 - gmx:100779825 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00656 1 8647399 8650544 Spst4g01305 4 49885975 49889242 PCT