Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01277 ATGAAAGCCCTCACCATTTCTTGTTCTAAGGCCATCGTTGACACTATAGGATCTTTGTCTCCCAGAGTTGCCATCCGTGTTGCTGATAGAGCCGAATTCTTCTTCACTCCGCGTTCAAGGAACGGCAGAAAGGGTTGCAACTTATGGGTCCTCAAACTTGTTCCAAACAAGGGAATTTTCCCAGTTCATGCAGTGCCATCAAAAGACCAGGTGGACTCCGAAACTATAGAAGCTGAAGCTCAAAAAGTTGAACAAACAAATGAATCGAAGTTTGTTCGTGTAGCATTTGAGTTGCAAAAGGATTGTGACTTCGGAGAACAGTTTCTTATAGTTGGAGATGATCCTATGCTTGGTTCATGGGATCCGATGGAAGCATTACCGATGACATGGTCTGAAGGACATGTGTGGACTGCTGAGCAGGATATACCTGCTGGAAAGTCAATCCAGTTCAAGTTCATATTGAAAGGCAAAGAAGGTGATATTATGTGGCAGCCAGGGTCAGATAGAATGATCCACACTTCGGAAACTATGAATAGAATAACTGTTTGTGAAGATTGGGAGAATGCAGAACTTCAGAAAATAATGGATGAAGATCAACTTGCTGAACCAGAAAAGGAATCCCAGATTGAATCAGAACTGTCTACTTTTGCTGAAATATTGGATAATCCTCAAGAAGAACTGGATTCCTATGCTTCTGAAATATCGGCTGTTGAAGATACCCAAATTCATGAAGAGGAGATACCACTTGCTGAACCAGTCATGCAACAAGCCACTGATAATAGTAGTTCTTCCTCGATGGAAATTCCTTTGACTATTATTGCAGAAAGTACGACTTCCCCTGAGGATCTTATCAAGAGTACAAGCAGTAAATGGAATGAAAAGAATATACTTCAAAAGAGTGAAGAATCTGCTGATAGTACAGGAAATGATGATATAATACATGATCTTGGACACAATGGAAGTCCTGCATCACTGGAGAATCAGGAAGGGATAATTGTGGATAGCAGCTTATTTGATTTTGAAGGCGGTCCTGTTCTTGTACCTGGCTTAATGGTACCACCAACTGAACCAACTAATGAAGCAGGACAAGGTGAAGTTCAAGAAAAGACTACCATGGACACTTCAGTTGAAGCTTCTGAAATCGATCCAGATCAGAATCCACCCAAGTTCAATAAGGAGCAAGAAACTGATGATGCCACACCCCAAGAGATAAATGCACCAATCAATAATGAGCCAGAGCTGTTTTACAATGGACATGAACAATCATCTCATTTGTTCCCAGAAACAGAGAGCAGCCCAAACTATGAACCAGAAGATGGCACTCCCATGCAAAATTACATCAAATGGAGCCAAGAAACGGTAAAGGAGTTTCTATCAAAACTAGGATTCCTTTGA 1395 0.4122 MKALTISCSKAIVDTIGSLSPRVAIRVADRAEFFFTPRSRNGRKGCNLWVLKLVPNKGIFPVHAVPSKDQVDSETIEAEAQKVEQTNESKFVRVAFELQKDCDFGEQFLIVGDDPMLGSWDPMEALPMTWSEGHVWTAEQDIPAGKSIQFKFILKGKEGDIMWQPGSDRMIHTSETMNRITVCEDWENAELQKIMDEDQLAEPEKESQIESELSTFAEILDNPQEELDSYASEISAVEDTQIHEEEIPLAEPVMQQATDNSSSSSMEIPLTIIAESTTSPEDLIKSTSSKWNEKNILQKSEESADSTGNDDIIHDLGHNGSPASLENQEGIIVDSSLFDFEGGPVLVPGLMVPPTEPTNEAGQGEVQEKTTMDTSVEASEIDPDQNPPKFNKEQETDDATPQEINAPINNEPELFYNGHEQSSHLFPETESSPNYEPEDGTPMQNYIKWSQETVKEFLSKLGFL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01277 464 MobiDBLite consensus disorder prediction 294 325 - -
Spst4g01277 464 MobiDBLite consensus disorder prediction 295 312 - -
Spst4g01277 464 Pfam Starch binding domain 92 178 IPR002044 GO:2001070
Spst4g01277 464 PANTHER STARCH-BINDING DOMAIN-CONTAINING PROTEIN 1 87 264 - -
Spst4g01277 464 MobiDBLite consensus disorder prediction 360 381 - -
Spst4g01277 464 SMART CBM_20_2 91 183 IPR002044 GO:2001070
Spst4g01277 464 SUPERFAMILY Starch-binding domain-like 89 185 IPR013784 GO:0030246
Spst4g01277 464 MobiDBLite consensus disorder prediction 422 444 - -
Spst4g01277 464 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 86 188 IPR002044 GO:2001070
Spst4g01277 464 CDD CBM20 93 186 - -
Spst4g01277 464 FunFam Related to glucoamylase 84 188 - -
Spst4g01277 464 MobiDBLite consensus disorder prediction 348 444 - -
Spst4g01277 464 Gene3D Immunoglobulins 89 187 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01277 Spst-Chr4 49226326 49229833 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01277 - - gmx:100784126 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00718 1 9284619 9288137 Spst4g01277 4 49226326 49229833 PCT