Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00718 ATGGGTGGGAAGCCTTCTACAATTGGAGATATATACAGCTATGGGATTCTATTACTAGAGATTTTCACCGGAAAAAGACCAACAGATGAAGCATTTGAAGGTGGCATGGGAATTCAGCATTTTGTAGCAATGGATCTACCTCACAATGAAGAAGCCATGGCCATTAACAGCTCTTGCTCCAAGGCCATTCTAGGAACTCATGTTCCTATGTATGCTCCAAATGCTTCCAACACACCCAAGTTTTCCTTAACCCCCAATGGCCACAAGGGTTGCAGCTCTGGGTTCCCAAAACTTGTTCAAAACAAGGGCCTTTTCCCACTTCATGCTGTGCCATCCAAAACTATGATGGATTTGGACAGTTTGGTGGTTCAAACTCAAGAACAACCAAAGGAGGAAGCAAAGATGATTAATGTCAAATTTCAGTTACACCGCAATTGTAAATATGGTGAACAATTTCTAGTAGTTGGTAATGATCCAATGTTTGGATCATGGAACCCTGAAAATGCAGTACCAATGAGCTGGTCAGAAGGGCATGTGTGGACTGCAGAGATGGGTGTACCTGTTGGAAAATTTCAATTCAAAATCATTTTGAAAAGAAGAGAAGGTGACATTGTGTGGCAGCCAGGGCCAGATAGATTTGTTCAGACTTGGGAGGCTATGAACAGAATCACTGTTTCTGAGGATTGGGAAAATGCTCAACTCCAGAAAGTAACAGATGATGATGAAGAACAAGTTTCCAAGACATCAGAGGAAGACCAACTTGCTCAGACAAATAAAGATTCCCAGATTGAGTCAGAAATTTCCAATTTGACTGAGAATCTTGATCGTCCAAAAGAGACACAGAAATGGAGTGCTTCTGCGGTGATGAAGAGCACACGTTGA 882 0.4206 MGGKPSTIGDIYSYGILLLEIFTGKRPTDEAFEGGMGIQHFVAMDLPHNEEAMAINSSCSKAILGTHVPMYAPNASNTPKFSLTPNGHKGCSSGFPKLVQNKGLFPLHAVPSKTMMDLDSLVVQTQEQPKEEAKMINVKFQLHRNCKYGEQFLVVGNDPMFGSWNPENAVPMSWSEGHVWTAEMGVPVGKFQFKIILKRREGDIVWQPGPDRFVQTWEAMNRITVSEDWENAQLQKVTDDDEEQVSKTSEEDQLAQTNKDSQIESEISNLTENLDRPKETQKWSASAVMKSTR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00718 293 SUPERFAMILY Protein kinase-like (PK-like) 2 81 IPR011009 -
Spst1g00718 293 SUPERFAMILY Starch-binding domain-like 134 225 IPR013784 GO:0030246
Spst1g00718 293 PANTHER STARCH-BINDING DOMAIN-CONTAINING PROTEIN 1 115 292 - -
Spst1g00718 293 MobiDBLite consensus disorder prediction 250 270 - -
Spst1g00718 293 MobiDBLite consensus disorder prediction 236 293 - -
Spst1g00718 293 Pfam Starch binding domain 136 221 IPR002044 GO:2001070
Spst1g00718 293 CDD CBM20 138 229 - -
Spst1g00718 293 SMART CBM_20_2 135 226 IPR002044 GO:2001070
Spst1g00718 293 Gene3D Immunoglobulins 131 230 IPR013783 -
Spst1g00718 293 Gene3D Transferase(Phosphotransferase) domain 1 1 82 - -
Spst1g00718 293 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 130 231 IPR002044 GO:2001070
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00718 Spst-Chr1 9284619 9288137 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00718 1 47 Receptor kinase-like Gene Family AT3G47580 57.447 7.50e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00718 - - vun:114184232 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00718 1 9284619 9288137 Spst1g00718 1 9284619 9288137 ECH
Spst1g00718 1 9284619 9288137 Spst4g01277 4 49226326 49229833 PCT