Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01148 ATGATAGCTGAGGGGGTAACTTTGAATGTTGTCAATTTTGGGGCTAAGCCAGATGGTGAAACTGACTCCACAAATGCATTATTGAGTGCATGGGGTACAGCATGCAGCTCAACAACACCAACCACCATTTATGTGCCTCTGGGAAGGTTCTTAGTAGGTAAAGTAGTGTTTAAGGGACGATGCAACAACAAGGGCATCACAGTTCGCATTGATGGCACACTGGTTGCACCTTCAAACTATGATGCCATTGGAAATTGTGGAAATTGGTTGTATTTTGATGATGTTGATGGAGTTGCAGTGATTGGTGGTGTTCTTGATGGCCAAGGAATAGGTCTGTGGGCATGTAAGAGATCTGGCAAGACTTGTCCAACTGGTGCTACGAACTTGGGATTTACCAATTCAAACAACATTGTGATCAATGGAGTGACCTCTCTGAACAGCCAAATGTTCCACATAGTTATTGATGGATCTTGCGGACCTGGTCATGGAATAAGTGTTGGAAGTTTAGGGAAGGAATTAGAAGAGGCTGGTGTGGAAAATGTGACAGTAAACACAGTGACATTTGCTGGAACTGAGAATGGTGTAAGAATAAAGTCATGGGGGAAACCTAGCAATGGGTTTGCAAGGAACATCCTTTTCCAACATGTTACCATGCTTGTTCAAAATCCCATTGTGATCGACCAAAATTATTGCCCCCATGAAAAGAATTGTGCAAATCAGGTTTCTGGGGTTGAAATTAGCAATGTGATGTACCAACATATTCATGGAAGTTCAACAAAAGAAGTTGCAGTTAAAATGAATTGTAGTCCAAAACATCGATGCAGTGGAATAAATTTGGAGGATGTGATGCTTACACATCAAACCAAACAAGCCGTGTGTAACACCCCGCATCACTCCCCGCATGCACGCAAGCAAGAACGAGTCTTGCCCGCCTTTTTTTCGCACTAA 948 0.4283 MIAEGVTLNVVNFGAKPDGETDSTNALLSAWGTACSSTTPTTIYVPLGRFLVGKVVFKGRCNNKGITVRIDGTLVAPSNYDAIGNCGNWLYFDDVDGVAVIGGVLDGQGIGLWACKRSGKTCPTGATNLGFTNSNNIVINGVTSLNSQMFHIVIDGSCGPGHGISVGSLGKELEEAGVENVTVNTVTFAGTENGVRIKSWGKPSNGFARNILFQHVTMLVQNPIVIDQNYCPHEKNCANQVSGVEISNVMYQHIHGSSTKEVAVKMNCSPKHRCSGINLEDVMLTHQTKQAVCNTPHHSPHARKQERVLPAFFSH 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01148 315 Pfam Glycosyl hydrolases family 28 155 297 IPR000743 GO:0004650|GO:0005975
Spst4g01148 315 PANTHER - 157 293 - -
Spst4g01148 315 ProSitePatterns Polygalacturonase active site. 155 168 IPR000743 GO:0004650|GO:0005975
Spst4g01148 315 Gene3D - 157 301 IPR012334 -
Spst4g01148 315 Gene3D - 3 156 IPR012334 -
Spst4g01148 315 SUPERFAMILY Pectin lyase-like 3 291 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01148 Spst-Chr4 44776150 44783000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01148 7 297 Glycoside Hydrolase AT3G59850 50.000 1.01e-117 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01148 K01184 - gmx:100784002 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01148 4 44776150 44783000 Spst4g01148 4 44776150 44783000 ECH
Spst4g01148 4 44776150 44783000 Spst1g00060 1 836191 839547 PCT