Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00060 ATGGAACCTGATGCAGGTCCAAGATTCAATGTCATTGACTATGGTGCCATGGGCAATGGTGAAGCTGATGATTCCCAAGCTTTTCTAAAAGCATGGAAAGAAGCATGTAATGCAAGTTATGGCACCCCAACACTTCTCATACCCAGAGACAAAACTTTCATGTTACAGCCTCTCTTGTTCAGTGGTCCCTGCAAGCCACCAACACTTCACATTAAGCTGAAGGGAACCATTACTGCCCCAAACAACATCAAGGATTGGAAATTGGCAAAAAGTAGTAGGAAAGCATGGATCCGTTTCAGGAGCATAAATGGTCTTGTTATTCGTGGAGGGGGACAAATCAATGGCCAAGGTGCTCCATGGTGGAATGCCTATTTCAATACTGAAATTTACAGACCAACGGCTCTTCATTTCCGTGAATGCAACAATCTATTCCTTAGCGGATTGACTCACATCAACAGTCCCAAAAATCATGTAAGCATAAATAGATGCAATGGATCGCTCATCTCCAAACTTCATTTCATCGCACCAGATCAAAGTCCAAACACTGACGGGATTGATATCTCCTATTCATCCAACATTCTCATCAAGAATTCTAAGATGGAAACTGGTGATGACTGCATTGCCATTAACCATGGATCCACCTTCATCAGCATAATTGGTGTTTTTTGTGGACCTGGCCATGGTATCAGTATTGGAAGCTTAGGAAAAAATGGAGCTCATCAAACAGTGGAAGAGATACATGTACGAAATTGCACCTTCAATAGAACAACAAATGGAGCTAGAATCAAGACATGGATAGGAGGTCGAGGATATGCAAGGAAGATTACCTTTAAGGATATTATACTTGTGGAAGCTACAAACCCTGTAATTATTGACCAACAATACAACCCATATGATAGTGGAGATGCCGTGAGAGTGAGTGATGTGAGCTATCACAATGTGAGGGGAACCTCAAGTTCAGCGCATGCAATCAAACTACATTGCGACAAAAACATAGGTTGCACCAACATTGTATTGAAGGGGATTAACATAACTACCAATTCTGGGAAGAAAACTTATGCATCATGCAAAAATGTAAAAGGGGTCTGCTCTTTGTGTAATCCCCATGTGCCATGTCTTTCAAAGTAG 1128 0.4158 MEPDAGPRFNVIDYGAMGNGEADDSQAFLKAWKEACNASYGTPTLLIPRDKTFMLQPLLFSGPCKPPTLHIKLKGTITAPNNIKDWKLAKSSRKAWIRFRSINGLVIRGGGQINGQGAPWWNAYFNTEIYRPTALHFRECNNLFLSGLTHINSPKNHVSINRCNGSLISKLHFIAPDQSPNTDGIDISYSSNILIKNSKMETGDDCIAINHGSTFISIIGVFCGPGHGISIGSLGKNGAHQTVEEIHVRNCTFNRTTNGARIKTWIGGRGYARKITFKDIILVEATNPVIIDQQYNPYDSGDAVRVSDVSYHNVRGTSSSAHAIKLHCDKNIGCTNIVLKGINITTNSGKKTYASCKNVKGVCSLCNPHVPCLSK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00060 375 Gene3D - 2 370 IPR012334 -
Spst1g00060 375 SMART pbh1 334 361 IPR006626 -
Spst1g00060 375 SMART pbh1 163 189 IPR006626 -
Spst1g00060 375 SMART pbh1 190 211 IPR006626 -
Spst1g00060 375 SMART pbh1 301 328 IPR006626 -
Spst1g00060 375 SMART pbh1 243 264 IPR006626 -
Spst1g00060 375 SMART pbh1 213 233 IPR006626 -
Spst1g00060 375 SUPERFAMILY Pectin lyase-like 8 373 IPR011050 -
Spst1g00060 375 ProSitePatterns Polygalacturonase active site. 220 233 IPR000743 GO:0004650|GO:0005975
Spst1g00060 375 PANTHER - 9 361 - -
Spst1g00060 375 Pfam Glycosyl hydrolases family 28 43 363 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00060 Spst-Chr1 836191 839547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00060 6 364 Glycoside Hydrolase AT5G27530 47.802 1.80e-116 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00060 K01184 - gmx:732657 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00060 1 836191 839547 Spst1g00060 1 836191 839547 ECH
Spst4g01148 4 44776150 44783000 Spst1g00060 1 836191 839547 PCT