Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00779 ATGCAGCACAACATCTTCACCTCCATTCGTAGCATGAAAATCATGGACGGTTGCAAGGGCACGCAGGTCCACGCGCTGAAATCCTCCGCCGCCGCCGATCGGACTGCCGCCGACTCTGCCTGCGGCGTCAGTGCAGCTGATAAAGCGCTGCACACTTCGCTCGACCATTCAAAAACCCCAAACGGTCGAACCAAACCGGTCTCTACTACAGCTCCAAGACACGACGCCGTTGCGGAGACTCTTCTCCCGTGCGGGCTTCCCGCTTTGGAGCTTCTGGAACCTTCGATTGAGCCTTCCTTGAAGCCCTTGGACTTTGTAGAAACCCTTGCCCGCGTTCATCGCAGGGCTGAGAGTTGTGCGGCGCTCGAGAAATCCGAGGTTTATTTGGAGCAATGCGTGGTGTTGCGTGGCCTGCCGGATCCGAAGCTGTTCCGGCGGGGACTACGCGAGGCTCGGCGGCACGCGGCGGAGGTGCACGCGAAAGTTGTACTGGCTTCGTGGTTGAGGTATGAGCGGAGAGAGGATGAGCTTGTTGGATCGAATTCGATGGATTGCTGTGGACGAAACCTTGAATGTCCCAAGGCTAGTTTGGTCCCCGGGTATGATCATGAATCGGTGTTTGATCGTTGTTCGTGTTTTCGTAGAGAGATAGTTAGTGATTGTGTTGATCATAGTCAGGAATGCGAACGAGAATGCTCCAGTTCGAGTGAATATGTCGATGGCAGTGGTGATCATGATGCTGATGCTGATGAGAATGACGTGTTATTCTGCATTGGTGATAGTGAAGTTAGTTGCAGGAGGTACTCGATGGCTGCACTCTCAAGGCCGTTTGAGACGATGTTGTGTGGTGAATTTGTCGAGTGTAGGAGAGAGAAGATAAATTTCTCTATGAATTCTGTTTCTGTTAAGGCAATGATGGCTGTTGAGGTTTTTAGTAGAACCAAGAGGCTTAGTCAGTTCCCTCCTAATGTTATTCTCGAGATGCTTTCTTTTGCGAATAAGTTTTGTTGTGAGGAGATGAAGCATGCTTGTGACACGCATTTGGCATCTCTGGTTCTGGACATGGATGATGCGGTTTTGCTGATTGAGTATGGACTGGAGGAGACTGCACATCTGCTGGTGGCGGCTTGCTTGCAGGTGTTTCTCAGGGAGCTTCCGGGTTCGTTGCAGCGATGGAGTGTTATGAAGCTGTTTTGTAGTCCAGAGGGTAGGGATAGATTGGCCCTTGCGGGGCACGTGTCGTTTGTGTTGTATTATTTTTTGAGTCAGGTTGCGATGGAGGAGGAAATGAAGTCTAACATGACAGTGATGCTCTTGGAAAGATTGGGAGAGTGTGCGGCGGAGGGTTGGCAAAAGCAACTTGCATATCACCAATTGGGAGTTGTTATGTTTGAGAGAAAGGAATACAAAGATGCACGACATTGGTTTGAGGCTGCTGTTGAGGCAGGACATGTTTATTCTTTAGTGGGTGTTGCAAGGGCCAAATATAAGCTCGGTGACATGTATTTAGCATACAAGATGGTAAACTCCCTTACAGAAAATTATAAACCAGTTGGTTGGATGTATCAAGAGAGGTCTTTGTATTGCACAGGGAAGGAGAAAATGGTGGACTTGGTCTCTGCAACTGAATTGGATCCAACTCTTTCTTTTCCATACAAATACAAAGCTGTTTCTTTGCTGGAGGAGAATAAGATTGGAGCTGCCATTTCTGAAATTGATAAAATAATTGGTTTCAAGGTTTCTCCGGACTGCCTTGAGTTGAGAGCTTGGTTTTTGATTGCTATGAAGGATTATGAAGGAGCCCTAAGAGATGTCAGGGCAATTTTGACGCTGGATCCAAATTATATGATGTTCTTTGGGAATATGCATGGTGGTCACTTGGTAGAACTCCTCCGCCCTGTTGCTCAGCAGTGGAGCCAGGCTGATTGCTGGATGCAATTGTACGACAGATGGTCTTCTGTCGATGATATTGGTTCTTTGGCTGTTGTACACAAAATGTTGGAAAATGACCCTGGGAAAAGTATCTTACGCTTTCGGCAATCGCTCCTTCTATTACGGTTAAATTCGCAGAAGGCAGCCATGCGCAGTTTGCGTCTAGCTAGAAATCATTCATGTTCAGCACATGAAAGACTTGTCTATGAAGGATGGATATTGTATGACACTGGCTATCGTGAAGAAGCATTGGCAAAAGCTGAGGAGTCCATTTCCATTCAAAGGTCATTTGAAGCTTTCTTTCTCAAAGCTTATGCCTTAGCTGACTCAAGTCTTGATTCAGCGTCTTCAAAGTATGTGATCAGTCTCTTGGAGGAAGCTCTTAGATGCCCCTCAGATGGTCTTCGTAAAGGACAAGCGCTGAATAATTTGGGGAGTGTATATGTAGATTGTGGCAAGTTGGACTATGCCGCTGACTGCTACAAGCATGCACTAAATATCAAGCATACACGAGCACATCAAGGGTTGGCACGCGTATATCATCTCAAGGATCAGCACAAAGATGCATATGATGAGATGACAAAACTAATAGCAAAGGCCAGGAATAATGCATCTGCATATGAAAAACGTTCAGAATATTGTGATCGTGACATGGCAAAGAGTGATCTTAGTTTGGCAACACAGTTGGATCCCCTAAGGACTTATCCTTACAGATATAGGGCAGCAGTTTTAATGGATGATCATAAGGAAGATGAAGCAATAGCAGAGCTTTCAAGGGCCATTGATTTTAAGCCAGATTTGCAACTGTTACATCTCCGAGCAGCATTTCATGATTCAATGGGTGATTATATTTCTACCGTCCGAGACTGTGACGCGGCCCTTTGTCTTGATCCTAGCCATGCTGAGACGTTAGAGCTTTGTAACAAAGCACGGGAGCAAATTAATGAACAAAAATGA 2889 0.4638 MQHNIFTSIRSMKIMDGCKGTQVHALKSSAAADRTAADSACGVSAADKALHTSLDHSKTPNGRTKPVSTTAPRHDAVAETLLPCGLPALELLEPSIEPSLKPLDFVETLARVHRRAESCAALEKSEVYLEQCVVLRGLPDPKLFRRGLREARRHAAEVHAKVVLASWLRYERREDELVGSNSMDCCGRNLECPKASLVPGYDHESVFDRCSCFRREIVSDCVDHSQECERECSSSSEYVDGSGDHDADADENDVLFCIGDSEVSCRRYSMAALSRPFETMLCGEFVECRREKINFSMNSVSVKAMMAVEVFSRTKRLSQFPPNVILEMLSFANKFCCEEMKHACDTHLASLVLDMDDAVLLIEYGLEETAHLLVAACLQVFLRELPGSLQRWSVMKLFCSPEGRDRLALAGHVSFVLYYFLSQVAMEEEMKSNMTVMLLERLGECAAEGWQKQLAYHQLGVVMFERKEYKDARHWFEAAVEAGHVYSLVGVARAKYKLGDMYLAYKMVNSLTENYKPVGWMYQERSLYCTGKEKMVDLVSATELDPTLSFPYKYKAVSLLEENKIGAAISEIDKIIGFKVSPDCLELRAWFLIAMKDYEGALRDVRAILTLDPNYMMFFGNMHGGHLVELLRPVAQQWSQADCWMQLYDRWSSVDDIGSLAVVHKMLENDPGKSILRFRQSLLLLRLNSQKAAMRSLRLARNHSCSAHERLVYEGWILYDTGYREEALAKAEESISIQRSFEAFFLKAYALADSSLDSASSKYVISLLEEALRCPSDGLRKGQALNNLGSVYVDCGKLDYAADCYKHALNIKHTRAHQGLARVYHLKDQHKDAYDEMTKLIAKARNNASAYEKRSEYCDRDMAKSDLSLATQLDPLRTYPYRYRAAVLMDDHKEDEAIAELSRAIDFKPDLQLLHLRAAFHDSMGDYISTVRDCDAALCLDPSHAETLELCNKAREQINEQK 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00779 962 Gene3D Tetratricopeptide repeat domain 860 962 IPR011990 GO:0005515
Spst1g00779 962 PANTHER ETO1-RELATED 7 961 IPR044631 GO:0010105
Spst1g00779 962 SMART tpr_5 453 486 IPR019734 GO:0005515
Spst1g00779 962 SMART tpr_5 878 911 IPR019734 GO:0005515
Spst1g00779 962 SMART tpr_5 582 615 IPR019734 GO:0005515
Spst1g00779 962 SMART tpr_5 708 741 IPR019734 GO:0005515
Spst1g00779 962 SMART tpr_5 912 944 IPR019734 GO:0005515
Spst1g00779 962 SMART tpr_5 782 815 IPR019734 GO:0005515
Spst1g00779 962 SUPERFAMILY TPR-like 455 910 IPR011990 GO:0005515
Spst1g00779 962 SUPERFAMILY TPR-like 556 812 IPR011990 GO:0005515
Spst1g00779 962 Gene3D Potassium Channel Kv1.1; Chain A 247 389 IPR011333 -
Spst1g00779 962 SUPERFAMILY POZ domain 250 349 IPR011333 -
Spst1g00779 962 Gene3D Tetratricopeptide repeat domain 658 859 IPR011990 GO:0005515
Spst1g00779 962 Coils Coil 827 854 - -
Spst1g00779 962 MobiDBLite consensus disorder prediction 52 71 - -
Spst1g00779 962 Gene3D Tetratricopeptide repeat domain 439 619 IPR011990 GO:0005515
Spst1g00779 962 ProSiteProfiles TPR repeat profile. 782 815 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00779 Spst-Chr1 10110405 10115052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00779 783 952 Glycosyltransferase AT3G04240 28.729 5.88e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00779 - - pvu:PHAVU_008G094700g 1713.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00779 1 10110405 10115052 Spst1g00779 1 10110405 10115052 ECH
Spst1g00779 1 10110405 10115052 Spst4g01019 4 42186900 42190382 PCT