Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00884 ATGGGTGCAGCTGAAGTAATGCCTGAGAACCCTATGCAAGCAGTTCCTATCCTTTCAAGAGAGAGCAGTTTTTCATCTTCACCTAGAAGGTTGGAAGGCAAGGTTGCTATCGTAACAGGGGGTGCGAGAGGGATTGGTGAAGCAACGGTGAGAGTGTTCGTGAAGAACGGTGCAAGGGTAGTAATTGCGGATGTTGAGGATGCAGTTGGCACAATGCTGGCGGAGACCTTGGCCCCTGCAGCCACGTACGTGCACTGCGACGTTAGCGTGGAAGAAGAGGTTGAGAATTTGGTGAGTTCAACAGTTTCTCGCTACGGCCAAGTGGACATTATGTTCAACAACGCAGGGGTGTTGGGGAACCAGTCCAAGAACAAAAGCATTGTGAACTTTGACCCCAACGAGTTCGACCGTGTAATGCAAGTGAACGTGAAGGGCATGGCCTTGGGGATCAAGCACGCTGCAAGGGCCATGATTCCTAAGGGCATTGGGTGCATCATTTCCACTGCCAGTGTTGCTGGGGTCATGGGGGGACTTGGCCCACATGCTTACACTGCCTCAAAGCATGCCATTGTGGGGCTCACTAAGAACACTGCTTGTGAGTTGGGAAGGTATGGAATAAGGGTCAATTGTATTTCACCCTTTGGGGTGGCCACCAACATGCTTGTGAATGCTTGGAGAAGTCGTGGTTGTGATGAGGAAGAGGGTGATGATGAGGGTATCAATTTTGGGTTGCCCTTTCAAGAGGAGGTTGAGAAAATGGAGGGGTTTGTAAGAGGGCTTGCCAACTTGAAAGGAGCAACTCTAAGAGCCAAAGATATTGCTGAGGCTGCACTCTATCTTGCTAGTGATGAATCCAAGTATGTCAGTGGTCATAATCTTGTTGTGGATGGTGGAATCACCTCTTCAAGAAATTGCATTGGTTTGTAG 927 0.4941 MGAAEVMPENPMQAVPILSRESSFSSSPRRLEGKVAIVTGGARGIGEATVRVFVKNGARVVIADVEDAVGTMLAETLAPAATYVHCDVSVEEEVENLVSSTVSRYGQVDIMFNNAGVLGNQSKNKSIVNFDPNEFDRVMQVNVKGMALGIKHAARAMIPKGIGCIISTASVAGVMGGLGPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATNMLVNAWRSRGCDEEEGDDEGINFGLPFQEEVEKMEGFVRGLANLKGATLRAKDIAEAALYLASDESKYVSGHNLVVDGGITSSRNCIGL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00884 308 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 300 IPR036291 -
Spst4g00884 308 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Spst4g00884 308 PRINTS Glucose/ribitol dehydrogenase family signature 183 202 IPR002347 -
Spst4g00884 308 PRINTS Glucose/ribitol dehydrogenase family signature 106 117 IPR002347 -
Spst4g00884 308 PRINTS Glucose/ribitol dehydrogenase family signature 263 283 IPR002347 -
Spst4g00884 308 PRINTS Glucose/ribitol dehydrogenase family signature 204 221 IPR002347 -
Spst4g00884 308 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Spst4g00884 308 FunFam Short-chain dehydrogenase reductase 19 304 - -
Spst4g00884 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Spst4g00884 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 202 IPR002347 -
Spst4g00884 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 117 IPR002347 -
Spst4g00884 308 CDD secoisolariciresinol-DH_like_SDR_c 31 300 IPR045309 GO:0016616
Spst4g00884 308 Pfam short chain dehydrogenase 34 224 IPR002347 -
Spst4g00884 308 Gene3D - 20 306 - -
Spst4g00884 308 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 26 303 - -
Spst4g00884 308 Pfam Enoyl-(Acyl carrier protein) reductase 251 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00884 Spst-Chr4 37293917 37295494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00884 28 301 Miscellaneous Gene Families AT4G05530 33.692 5.35e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00884 - - gmx:100790562 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00884 4 37293917 37295494 Spst1g00828 1 10498908 10500239 PCT