Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00828 ATGATTGTGATGTCTGAGAAACCCCTTCAGCCAGTTCATCCACAGGTTTCAGACACCACTTTTTGTCCTTCTTCTAAAAGGTTGGAAGGCAAAATTGCTATTGTAACTGGGGGTGCTAGGGGCATTGGTGAAGCAACTGTGAGAGTTTTTGTGAAGCATGGTGCAAAGGTGGTGATTGCTGATGTTGAGGATGCAGCTGGAGCCATGCTTGCTGAAACACTATCTCCTTCAGCTACCTACGTCCACTGTGATGTTAGCTTGGAGAAGGAGGTTGAGAACTTGGTTAGTTCCACAATTTCTCGCTATGGACACCTTGACATCATGTTCAACAATGCTGGGGTGCTAGGGAACCAGTCCAATAACAAGAGCATAGTCAACTTTGACCCTAATGAGTTTGACCGAGTGATGAGTGTGAATGTGAAGGGTGTGGCTTTGGGGATCAAGCATGCTGCAAGAGTGATGATTCCAAGAGGAGTAGGGTGCATTATCTCAACTTCTAGTGTGGCTGGGCTCATGGGGGGGCTTGGACCACATGCTTACACAGCCTCAAAGCATGCCATAGTTGGGCTTACAAAGAACACTTCTTGTGAGTTGGGGAGGTATGGGATCAGGGTCAATTGCATTTCACCATTTGGGGTGGCTACTTCCATGCTTGTGAATGCATGGAGGGCTTGTGATGAAGAGGTTGATCATGAGGGCATCAATTTTGGGGTGCCTTTGCCAGAGGAAGTGGAGAAAATGGAGGAGTTTGTTAGAGGTCTTGCCAACTTGAAAGGACCAACTTTGAGGGCTCTGGACATTGCTGAGGCTGCACTTTATCTTGCTAGTGATGAATCCAAGTATGTTAGTGGCCATAATCTTGTTGTGGATGGTGGAGTCACTTCCTCAAAAAATTGTATTGGATTGTAA 909 0.4642 MIVMSEKPLQPVHPQVSDTTFCPSSKRLEGKIAIVTGGARGIGEATVRVFVKHGAKVVIADVEDAAGAMLAETLSPSATYVHCDVSLEKEVENLVSSTISRYGHLDIMFNNAGVLGNQSNNKSIVNFDPNEFDRVMSVNVKGVALGIKHAARVMIPRGVGCIISTSSVAGLMGGLGPHAYTASKHAIVGLTKNTSCELGRYGIRVNCISPFGVATSMLVNAWRACDEEVDHEGINFGVPLPEEVEKMEEFVRGLANLKGPTLRALDIAEAALYLASDESKYVSGHNLVVDGGVTSSKNCIGL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00828 302 PRINTS Glucose/ribitol dehydrogenase family signature 180 199 IPR002347 -
Spst1g00828 302 PRINTS Glucose/ribitol dehydrogenase family signature 257 277 IPR002347 -
Spst1g00828 302 PRINTS Glucose/ribitol dehydrogenase family signature 103 114 IPR002347 -
Spst1g00828 302 PRINTS Glucose/ribitol dehydrogenase family signature 32 49 IPR002347 -
Spst1g00828 302 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Spst1g00828 302 PRINTS Glucose/ribitol dehydrogenase family signature 201 218 IPR002347 -
Spst1g00828 302 FunFam Short-chain dehydrogenase reductase 18 298 - -
Spst1g00828 302 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 24 297 - -
Spst1g00828 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Spst1g00828 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 199 IPR002347 -
Spst1g00828 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 103 114 IPR002347 -
Spst1g00828 302 Pfam Enoyl-(Acyl carrier protein) reductase 244 294 - -
Spst1g00828 302 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 294 IPR036291 -
Spst1g00828 302 Pfam short chain dehydrogenase 31 221 IPR002347 -
Spst1g00828 302 Gene3D - 19 301 - -
Spst1g00828 302 CDD secoisolariciresinol-DH_like_SDR_c 27 294 IPR045309 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00828 Spst-Chr1 10498908 10500239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00828 5 293 Acyl Lipid Metabolism Gene Families AT1G24360 26.000 4.53e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00828 - - gmx:100775210 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00828 1 10498908 10500239 Spst1g00828 1 10498908 10500239 ECH
Spst4g00884 4 37293917 37295494 Spst1g00828 1 10498908 10500239 PCT