Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00534 ATGGCTGCGTCATCCACCATTAACAACTTCCTCTCTTTCTTCTTAACCCCAAAACCTCCGCCACCCTCTCCACCGCCGCCACTTAACTTTAACTCCACCACTTCTTCTCAGACCCACAAACCCTCACAGCCCCTAATTACTCAATACGACCCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTATTGTGCTTCTTCCACTGAATTGTCCTCTGTGATATGTCCCTCCATGGCGTACACAAACACGCTCTTCTTCCGGTCTCCGTACAACGTGCAGGTGGTGGTGGCCGGCGACGAGCCCGAGGAACACCTCCTCAACAGGTTCCGCAGAGAGGTGTCGAAGGCCGGCATCATTCAGGAGTGTAGGCGGAGGAGGTACTTCGAAAACAGACAAGAAGAGAAAAAACGCAGGTCGCGTGAGGCTGCTAAACGCAACCGCAAAAGGCGGCCCATGTCAAACACTGTAGCCCAGAAAAAACAGGATGTACAACCAACCAAGAGAGAAGACGATGAGGATAACTGGGATCTACCTGAAGGAGACACTCTGTATTAA 549 0.5082 MAASSTINNFLSFFLTPKPPPPSPPPPLNFNSTTSSQTHKPSQPLITQYDPSSSSSSSSSYCASSTELSSVICPSMAYTNTLFFRSPYNVQVVVAGDEPEEHLLNRFRREVSKAGIIQECRRRRYFENRQEEKKRRSREAAKRNRKRRPMSNTVAQKKQDVQPTKREDDEDNWDLPEGDTLY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00534 182 MobiDBLite consensus disorder prediction 15 29 - -
Spst4g00534 182 Pfam Ribosomal protein S21 91 145 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst4g00534 182 NCBIfam 30S ribosomal protein S21 90 147 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst4g00534 182 Hamap 30S ribosomal protein S21 [rpsU]. 89 145 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst4g00534 182 PRINTS Ribosomal protein S21 family signature 125 135 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst4g00534 182 PRINTS Ribosomal protein S21 family signature 101 110 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst4g00534 182 PRINTS Ribosomal protein S21 family signature 113 123 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst4g00534 182 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 181 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst4g00534 182 MobiDBLite consensus disorder prediction 14 60 - -
Spst4g00534 182 MobiDBLite consensus disorder prediction 30 60 - -
Spst4g00534 182 Gene3D Ribosomal protein S8 104 142 IPR038380 -
Spst4g00534 182 MobiDBLite consensus disorder prediction 129 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00534 Spst-Chr4 8403705 8405992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00534 - - vra:106765493 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00348 1 4738785 4742724 Spst4g00534 4 8403705 8405992 PCT