Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00348 ATGGCAGCCGCATCCTCCCTCACCTCCTTCCTCTCCTTCCTCCTCCCTGGAAAGCCCCAACCGCAGCCTCCTTCCATCACGCGCTTTCCGCTTCAGAGCCACAAGCTATGTGCCCAACACCATGACCACCACTCACCGGAGCTGTCCTCGCACGTGATGAACCCGTCTCACGCGCACGCTAACACACTCTTCTTCCGCTCGGCTTACAACGTGCAGGTGGTGGTTGACGAGAACGAACCGGAGGAGAGGCTGCTCAATCGGTTCCGTAGAGAGGTCATGAAAGCCGGAGTCATACAAGAGTGCAAGAGGAGACGCTTCTTTGAGAACAAGCAGGAGGAGAAGAAACGCAAGACCCGCGAAGCTGCCAAGCGTAACAGCAGAAGAAGGCGCCCTCAATCGAGATATCAAGCACAAAACAAGCCGGATGTTGCAACAACCAAGAAGGTTGAGGATGATGATAATTGGGATCTTCCGGAATATGATGTTGACCACTGGAATGTATTTAAGTTATTGAGTGACCAGGGTTTTCTCTCTGATGAGGTTACTGAAATCCATGACCTCGTTGGAACAAGACTAAGGGTTAGATACAGGGTATTCAAGCATGAACTGAAAAATTTAGTCATGAAGAAGCAATGTAGGCGATGCCAAAATATGGTTGTGCTTTTAGAGAAATAA 675 0.4993 MAAASSLTSFLSFLLPGKPQPQPPSITRFPLQSHKLCAQHHDHHSPELSSHVMNPSHAHANTLFFRSAYNVQVVVDENEPEERLLNRFRREVMKAGVIQECKRRRFFENKQEEKKRKTREAAKRNSRRRRPQSRYQAQNKPDVATTKKVEDDDNWDLPEYDVDHWNVFKLLSDQGFLSDEVTEIHDLVGTRLRVRYRVFKHELKNLVMKKQCRRCQNMVVLLEK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00348 224 MobiDBLite consensus disorder prediction 120 134 - -
Spst1g00348 224 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 161 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst1g00348 224 MobiDBLite consensus disorder prediction 109 150 - -
Spst1g00348 224 Hamap 30S ribosomal protein S21 [rpsU]. 70 126 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst1g00348 224 Pfam Ribosomal protein S21 72 125 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst1g00348 224 PRINTS Ribosomal protein S21 family signature 74 82 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst1g00348 224 PRINTS Ribosomal protein S21 family signature 82 91 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst1g00348 224 PRINTS Ribosomal protein S21 family signature 94 104 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst1g00348 224 PRINTS Ribosomal protein S21 family signature 106 116 IPR001911 GO:0003735|GO:0005840|GO:0006412
Spst1g00348 224 Gene3D Ribosomal protein S8 85 123 IPR038380 -
Spst1g00348 224 NCBIfam 30S ribosomal protein S21 71 128 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00348 Spst-Chr1 4738785 4742724 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00348 - - gmx:100780245 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00348 1 4738785 4742724 Spst4g00534 4 8403705 8405992 PCT