Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00357 ATGGCATTCCGTGTTATGCCTTCTAGAATCCTCAAGAACCTCCCTTATAACATAAGAACGAAGCCCCTCAACACCATCCACCACTCCCTCTACACCACCATCGCGCCACCGTCTCCCACTACGGCGACGCTGAGCTTGGAGGATGCGGAGCAGCTGTTCCGGACGGTGTCGACAGGACATCTGCTCCGGTCCTCCGCCGTGCAGCATGCTATGGCAGTGGGGCCCATGGTGGACTTGGGAATGTGGGTGATGAAGTCAAGGATGCTACAGAGCGAGGTGATGAAGGATCTTGCCATGGCCGCCATGCGCCATACGTTTTACACCCACTTTTGCGCCGGTGAGGATGCGGTGGCAGCCGGGAGGAGTATACGGGCGCTGAACGACACCGGGTTGCGTAGCATGCTGGTTTATGGGGTGGAAGACGCACACGACAATGAGGGGTGTGATAGGAACCTTCAAGGGTTTCTTCACAATGTTGATGTTAGCAAATCACTTCCACCATCCTCTGTGAGCTTTGTTATTGTGAAAATTACTGCAATATGCCCCATGGCATTGCTAGAAAGAGTTAGTGACCTTCTAAGATGGCAACAGAAGGACCCTTCATTTGTTCTGCCATGGAAGCAAGATTCCCTCCCAATTTTTTCAGAATCTAGCCCTTTGTACCACACGCAGAAGAGACCAGAACCTGTAACCCCAGAAGAAGAGAGTGATCTTCAACTAGCCAACCAAAGACTCCTTGAACTTGGTCAAAAATGTGTGGAAGCAAATATGCCTTTGTTGGTTGATGCTGAATACACTACTGTTCAGCCAGCTATTGATTACTTCACATACTCTTCTGCCATCATGCACAACAAGGATGGCAACCCTGTTGTGTTTGGAACCGTTCAAACATACTTGAAAGATGCCAAGGAAAGGTTGTTGCTGACAACAAAGGCAGCAGAAAAAATGGGAGTTCCAATGGGGTTCAAATTGGTAAGGGGTGCTTACATGTCCGCAGAGGATAATTTGGCTGAGTCTTTCGGACATGCATCCCCAATTCACAATACCATTCAGGACACACACAATTGCTTCAATGACTGCTCATCATTTCTGCTTGAGAAGGTTGCTACTGGACCTGGTTCTGTTGTTCTTGCAACCCACAATATTGAATCAGGGAAATTGGCTGCAGCAAAAGCACATGAATTGGGAGTTGGAAAGGTGAACCAGAAGCTAGAATTTGCACAGCTATATGGAATGTCAGATGCACTTTCCTATGGTTTGAGCAATGCAGGGTTTCAGGTCAGCAAGTATATGCCATTTGGGCCTGTAGAAATGGTCATGCCTTACCTCCTTAGAAGGGCTGAAGAGAATAGAGGGGTCTTGGCTGCTTCAGGCTTTGATAGGCAACTTGTTAGGAGTTGGGAAGAAGACTCAAAGCTTCAGTGTTCTAATGCATACAGCCATATGCTGCAGGATTCTCTGACTTCAAAAAGTGGAAAACTAAAACTTGACTGTGCTATGTCTCACACCATGAAGCAGTGGTTTCACCTTGGAAATTCTCATGTGATTGGTGTGATCTCTTTGATAATAATATTGGGAGCAGTAAATGTGAAGGTAGCAGAATGTAGGGAATATAATGGATTGAGCAACGTTGAATACCCTGCCATAAATTGCAGAAAACACAGTGCAGTTTTGACAGAATTTGGTGGGGTTGGTGATGGAAAAGCATCGAACACGAAGGTGTTTCGATCTGCAATAAGCAAACTGAGCCAATATGCTTCTGATGGAGGTGCACAACTTATTGTGCCACCTGGCAAATGGCTAACGGGACCCTTCAATCTTACAAGCCATTTCACTCTCTTTCTCCAAAAGGGTGCTGTTCTTCTTGCTTCTCAGGATGAATCAGAATGGCCCCAACTTCCTGTACTACCTTCTTATGGAAGAGGAAGAGATGCTCCTGGTGGAAGGTTTAGCAGTCTAATTTTTGGGACTAACCTCGTTGATGTTGTAATAACTGGTCAAAATGGTACAATTGATGGTCAAGGATCTTATTGGTGGGACAAGTTCCACAAGAACCAATTGACTCTCACCAGGCCATACATGATTGAGATCATGTACTCTGATCAAATTCAAATATCAGATCTCACTTTGGTCAATTCCCCAAGCTGGTTTGTCCATCCAATTTACAGCAGTAACATAATTATAAAAGGGCTTACCATTCTTGCACCAGTGACCTCTCCCAACACAGATGGAATAGACCCAGATTCATGTACAAACACTATGATTGAAGACTGCTACATCGTTTCGGGTGACGATTGCGTTGCAGTAAAAAGTGGGTGGGATGAGTATGGAATTAGATTTGGAATGCCAACCCGGCACTTAATCATTAGAAGGGTGACTTGTATATCGCCAGACAGTGCCATGGTTGCATTAGGCAGTGAAATGTCTGGTGGAATTGAAGATGTTAGAGTTGAAGATCTCACTGCCATCAACACTGAGTCAGCTGTTAGAATCAAAACAGCAGTTGGTAGAGGTGGATATGTGAAGAACATATTTGTCAGAGGATTGAAGCTGAACACCATGAAATATGTATTTTGGATGACTGGGTCTTATGGATCACATCCTGACCCTGGCTTTGACCCCAAAGCACTTCCTATTATTTCTGGAATAAATTATAGAAATGTTGTTGCGAAGAACGTCACATATTCAGCAAAACTTGAAGGACTTTCTAATGATCCTTTCACAGGAATCTGCATTTCTAATGTGACTATCCAAGTGAGTGAACAACAAAAGAAGCTTCAATGGAATTGCACTGATGTTGCTGGAGCTTCGAGCAATGTCACTCCTAACCCCTGTCCATTGCTGCCACAAAAAGAGAAACTCGTTTGTCCTTTTCCAAATGACAAACTACCCATTGAAGATGTTCAATTCAAGACATGTTCCTTGAAAACTGTCTTCTAA 2940 0.4463 MAFRVMPSRILKNLPYNIRTKPLNTIHHSLYTTIAPPSPTTATLSLEDAEQLFRTVSTGHLLRSSAVQHAMAVGPMVDLGMWVMKSRMLQSEVMKDLAMAAMRHTFYTHFCAGEDAVAAGRSIRALNDTGLRSMLVYGVEDAHDNEGCDRNLQGFLHNVDVSKSLPPSSVSFVIVKITAICPMALLERVSDLLRWQQKDPSFVLPWKQDSLPIFSESSPLYHTQKRPEPVTPEEESDLQLANQRLLELGQKCVEANMPLLVDAEYTTVQPAIDYFTYSSAIMHNKDGNPVVFGTVQTYLKDAKERLLLTTKAAEKMGVPMGFKLVRGAYMSAEDNLAESFGHASPIHNTIQDTHNCFNDCSSFLLEKVATGPGSVVLATHNIESGKLAAAKAHELGVGKVNQKLEFAQLYGMSDALSYGLSNAGFQVSKYMPFGPVEMVMPYLLRRAEENRGVLAASGFDRQLVRSWEEDSKLQCSNAYSHMLQDSLTSKSGKLKLDCAMSHTMKQWFHLGNSHVIGVISLIIILGAVNVKVAECREYNGLSNVEYPAINCRKHSAVLTEFGGVGDGKASNTKVFRSAISKLSQYASDGGAQLIVPPGKWLTGPFNLTSHFTLFLQKGAVLLASQDESEWPQLPVLPSYGRGRDAPGGRFSSLIFGTNLVDVVITGQNGTIDGQGSYWWDKFHKNQLTLTRPYMIEIMYSDQIQISDLTLVNSPSWFVHPIYSSNIIIKGLTILAPVTSPNTDGIDPDSCTNTMIEDCYIVSGDDCVAVKSGWDEYGIRFGMPTRHLIIRRVTCISPDSAMVALGSEMSGGIEDVRVEDLTAINTESAVRIKTAVGRGGYVKNIFVRGLKLNTMKYVFWMTGSYGSHPDPGFDPKALPIISGINYRNVVAKNVTYSAKLEGLSNDPFTGICISNVTIQVSEQQKKLQWNCTDVAGASSNVTPNPCPLLPQKEKLVCPFPNDKLPIEDVQFKTCSLKTVF 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00357 979 Gene3D - 78 486 - -
Spst4g00357 979 SUPERFAMILY Pectin lyase-like 551 961 IPR011050 -
Spst4g00357 979 Gene3D - 533 941 IPR012334 -
Spst4g00357 979 Pfam Proline dehydrogenase 121 454 IPR002872 -
Spst4g00357 979 PANTHER PECTIN LYASE-RELATED 524 967 - -
Spst4g00357 979 SMART pbh1 723 749 IPR006626 -
Spst4g00357 979 SMART pbh1 750 771 IPR006626 -
Spst4g00357 979 SMART pbh1 880 914 IPR006626 -
Spst4g00357 979 SMART pbh1 812 833 IPR006626 -
Spst4g00357 979 Pfam Glycosyl hydrolases family 28 654 934 IPR000743 GO:0004650|GO:0005975
Spst4g00357 979 SUPERFAMILY FAD-linked oxidoreductase 113 457 IPR029041 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00357 Spst-Chr4 4357507 4365170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00357 521 975 Glycoside Hydrolase AT3G48950 67.532 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00357 - - gmx:100779166 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00357 4 4357507 4365170 Spst4g00357 4 4357507 4365170 ECH
Spst4g00357 4 4357507 4365170 Spst1g03655 1 46234163 46239965 PCT