Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04987 ATGTCGGGTGGCACGCAGAAGAGTCTGAGAAAGGCACTCGGGGCACTTAAGGACACTACAACAGTCTCATTGGCTAAGGTCAACAGTGATTACAAGGAATTGGACATTTCTATAGTTAGAGCCACAAATCATGTTGAACGTCCGGCAAAGGAAAAGCATATAAGAGCTATATTTGCAGCTATCTCAGCTACAAGACCTAGAGCTGATGTTGCCTATTGCATCCACGCACTTGCTCGGCGATTATCAAAGACACATAACTGGGCAGTTGCATTGAAAACTTTAACTGTTATTCACCGTGCTCTAAGGGAAGTGGATCCTACATTTCATGAAGAACTCATTAATTATGGGAGAAGTAGAAGTCATATGCTCAATATGGCTCATTTTAAAGATGATTCCAGTCCAAATGCATGGGATTATTCTGCATGGGTCCGCACTTATGCATTATTTTTGGAGGAAAGGCTGGAATGTTTTCGTGTGTTGAAGTATGACATTGAGGCAGACCGCCCTAGGACCAAAGATTTGGATACTGCAGAACTATTAGAGCAGTTGCCAGCTTTACAACAACTTCTCAATCGAGTTATTGGTTGCCAGCCACACGGGGCAGCTGTAAATAACTTTGTCATTCAGTTAGCGCTCTCAATGGTTGCTTCAGAAAGCATTAAAATTTATCAAGCTATTAGTGATGGCACAGTCAATATGGTTGACAAGTTTTTTGAGATGCAACGCCATGATGCTCTGAAAGCTCTTGATATATACAGGAGGGTTGGGCAGCAGGCCGAGAGACTGTCAGAGTTTTATGAAATATGCCGAAATCTTGATATTGGACGTGGAGAGAAGTTCATTAAAGTTGAGCAGCCCCCTTCATCATTTCTGCAAGCAATGGAAGAGTATGTTAAAGACGCGCCCCAGGGACCAATAGTTCGCAAGGATCAGGCTATTGAAAACAAGGAAGTTTTAGCTGTTGAATACAAAAAGACAACAGAAGTGCAAGAGGAACGTCCACCCTCACCTCCTCCTTCTGAACCTGTGAAAGTGGAAACACCACCAGTACAACCACCACCTGATCTGTTGAATTTGGAGGATCCAGTTCCAGCTGCTTTAGAATTGGAAGAGAAGAATGCATTGGCTCTAGCCATTGTTCCTGTTGATGTTGAACAACAACCTTCTGCTGTGTCAAATCCAGCAAATGGAACTACAGGATGGGAATTGGCACTTGTTACTGCTCCTAGTTCAAATGAGAATGCTACGGCAGCTAGCAAACTGGCTGGAGGTTTGGACAAGCTTACTCTAGACAGCCTTTACGATGATGCCCTCAGGAGAAACAACCAAAATGTCAGCTATAATCCATGGGAGCCTGCACCAGTGGGAAATGTAGGGCAACCAACGATGCACGATCCATTTTTTGCCTCTAATGCAGTGGCTGCTCCACATTCTGTTCAGATGGCTGCCATGTCCAACCAGCAGCAAGCTTTCATGTACCAGCAGCAGCAGCAAATGATGATGATGGCCCCTCAACAACAATCAGTAAATCCTTTTGGAAATCCTTATGGAGCCACTGTTCACCCCTATGGCTCAGGTATGCCTGTTCAATCATACAATCCATATACAGGTCTCATCTAG 1620 0.442 MSGGTQKSLRKALGALKDTTTVSLAKVNSDYKELDISIVRATNHVERPAKEKHIRAIFAAISATRPRADVAYCIHALARRLSKTHNWAVALKTLTVIHRALREVDPTFHEELINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKYDIEADRPRTKDLDTAELLEQLPALQQLLNRVIGCQPHGAAVNNFVIQLALSMVASESIKIYQAISDGTVNMVDKFFEMQRHDALKALDIYRRVGQQAERLSEFYEICRNLDIGRGEKFIKVEQPPSSFLQAMEEYVKDAPQGPIVRKDQAIENKEVLAVEYKKTTEVQEERPPSPPPSEPVKVETPPVQPPPDLLNLEDPVPAALELEEKNALALAIVPVDVEQQPSAVSNPANGTTGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNNQNVSYNPWEPAPVGNVGQPTMHDPFFASNAVAAPHSVQMAAMSNQQQAFMYQQQQQMMMMAPQQQSVNPFGNPYGATVHPYGSGMPVQSYNPYTGLI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04987 539 Gene3D ANTH domain 165 319 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Spst3g04987 539 MobiDBLite consensus disorder prediction 325 355 - -
Spst3g04987 539 FunFam Clathrin assembly protein AP180 8 164 - -
Spst3g04987 539 Pfam ANTH domain 33 300 IPR011417 GO:0005543
Spst3g04987 539 FunFam putative clathrin assembly protein At5g35200 166 318 - -
Spst3g04987 539 SUPERFAMILY GAT-like domain 169 300 - -
Spst3g04987 539 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 494 IPR045192 GO:0048268|GO:0072583
Spst3g04987 539 MobiDBLite consensus disorder prediction 332 355 - -
Spst3g04987 539 SUPERFAMILY ENTH/VHS domain 33 165 IPR008942 -
Spst3g04987 539 SMART enth_2 32 164 IPR013809 -
Spst3g04987 539 CDD ANTH_N 34 157 - -
Spst3g04987 539 Gene3D - 7 164 IPR008942 -
Spst3g04987 539 ProSiteProfiles ENTH domain profile. 26 164 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04987 Spst-Chr3 101652637 101657498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04987 K20043 - gmx:100815239 960.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04987 3 101652637 101657498 Spst3g04987 3 101652637 101657498 ECH
Spst3g04987 3 101652637 101657498 Spst9g02578 9 59742894 59753825 PCT