Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04892 ATGAAAGAAGCTAGGGACACTGACACTTCCCTTGCCCAAAAAATTAGTGATTACGATTCCTCCTTATCGAACCTGGGCCAACAACCCAACATTCACCCCACTCTCGATTCCAGCCATGAAATGAGCTGGTCTGGAGGAGATTGGATGTGCGGTGTTTGCCAGCACGTAAATTTCAAAAAGAGGGAAGCATGCCAGAGTTGTGGATACCCAAAGTATGGGGGACCTGACCCTTCAACCTACAGATACAACAGGACTGAAGCTTTGGCAGGGGACTGGTTTTGCAGCTGTGGAGGTCACAACTATGCCAGTCGATCAAACTGCTACAGATGTGGTGCAATGAAAGATGACTATTCTTCAGGATATGGCAACAACTCTGGAGGATATGGATCTGACACTTTCCCCCCAGGATGGAAGACTGGAGACTGGCTTTGCCCAAGACTTGGATGTGGAGTGCATAATTATGCTAGCAGGACAGAATGCTATAAATGCAAAATGCCAAGGGATTTTGGTGAGAAAAGTTTAGTGTTCTGA 531 0.467 MKEARDTDTSLAQKISDYDSSLSNLGQQPNIHPTLDSSHEMSWSGGDWMCGVCQHVNFKKREACQSCGYPKYGGPDPSTYRYNRTEALAGDWFCSCGGHNYASRSNCYRCGAMKDDYSSGYGNNSGGYGSDTFPPGWKTGDWLCPRLGCGVHNYASRTECYKCKMPRDFGEKSLVF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04892 176 ProSitePatterns Zinc finger RanBP2-type signature. 48 67 IPR001876 -
Spst3g04892 176 Pfam Zn-finger in Ran binding protein and others 138 166 IPR001876 -
Spst3g04892 176 Pfam Zn-finger in Ran binding protein and others 89 114 IPR001876 -
Spst3g04892 176 SUPERFAMILY Ran binding protein zinc finger-like 39 74 IPR036443 -
Spst3g04892 176 ProSiteProfiles Zinc finger RanBP2 type profile. 88 116 IPR001876 -
Spst3g04892 176 PANTHER ZINC FINGER PROTEIN 84 171 - -
Spst3g04892 176 Gene3D - 82 116 - -
Spst3g04892 176 Gene3D - 36 75 - -
Spst3g04892 176 Gene3D - 133 169 - -
Spst3g04892 176 SMART zf_4 90 113 IPR001876 -
Spst3g04892 176 SMART zf_4 46 70 IPR001876 -
Spst3g04892 176 SMART zf_4 140 166 IPR001876 -
Spst3g04892 176 ProSiteProfiles Zinc finger RanBP2 type profile. 138 169 IPR001876 -
Spst3g04892 176 SUPERFAMILY Ran binding protein zinc finger-like 86 116 IPR036443 -
Spst3g04892 176 SUPERFAMILY Ran binding protein zinc finger-like 132 169 IPR036443 -
Spst3g04892 176 ProSitePatterns Zinc finger RanBP2-type signature. 142 163 IPR001876 -
Spst3g04892 176 ProSiteProfiles Zinc finger RanBP2 type profile. 44 73 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04892 Spst-Chr3 100728633 100733150 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04892 - - gmx:100780120 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02522 9 59056795 59058409 Spst3g04892 3 100728633 100733150 PCT